Literature DB >> 22740660

Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV.

Ahmad F Khadem1, Adam S Wieczorek, Arjan Pol, Stéphane Vuilleumier, Harry R Harhangi, Peter F Dunfield, Marina G Kalyuzhnaya, J Colin Murrell, Kees-Jan Francoijs, Henk G Stunnenberg, Lisa Y Stein, Alan A DiSpirito, Jeremy D Semrau, Aurélie Lajus, Claudine Médigue, Martin G Klotz, Mike S M Jetten, Huub J M Op den Camp.   

Abstract

The draft genome of Methylacidiphilum fumariolicum SolV, a thermoacidophilic methanotroph of the phylum Verrucomicrobia, is presented. Annotation revealed pathways for one-carbon, nitrogen, and hydrogen catabolism and respiration together with central metabolic pathways. The genome encodes three orthologues of particulate methane monooxygenases. Sequencing of this genome will help in the understanding of methane cycling in volcanic environments.

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Year:  2012        PMID： 22740660      PMCID： PMC3393509          DOI： 10.1128/JB.00501-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  17 in total

1.  Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.

Authors:  Rich Boden; Michael Cunliffe; Julie Scanlan; Hélène Moussard; K Dimitri Kits; Martin G Klotz; Mike S M Jetten; Stéphane Vuilleumier; James Han; Lin Peters; Natalia Mikhailova; Hazuki Teshima; Roxanne Tapia; Nikos Kyrpides; Natalia Ivanova; Ioanna Pagani; Jan-Fang Cheng; Lynne Goodwin; Cliff Han; Loren Hauser; Miriam L Land; Alla Lapidus; Susan Lucas; Sam Pitluck; Tanja Woyke; Lisa Stein; J Colin Murrell
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

2.  Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia.

Authors:  Huub J M Op den Camp; Tajul Islam; Matthew B Stott; Harry R Harhangi; Alexander Hynes; Stefan Schouten; Mike S M Jetten; Nils-Kåre Birkeland; Arjan Pol; Peter F Dunfield
Journal:  Environ Microbiol Rep       Date:  2009-03-03       Impact factor: 3.541

3.  Ammonia cometabolism and product inhibition vary considerably among species of methanotrophic bacteria.

Authors:  Györgyi Nyerges; Lisa Y Stein
Journal:  FEMS Microbiol Lett       Date:  2009-06-03       Impact factor: 2.742

Review 4.  Nitrifying and denitrifying pathways of methanotrophic bacteria.

Authors:  Lisa Y Stein; Martin G Klotz
Journal:  Biochem Soc Trans       Date:  2011-12       Impact factor: 5.407

5.  Nitrogen fixation by the verrucomicrobial methanotroph 'Methylacidiphilum fumariolicum' SolV.

Authors:  Ahmad F Khadem; Arjan Pol; Mike S M Jetten; Huub J M Op den Camp
Journal:  Microbiology       Date:  2010-01-07       Impact factor: 2.777

6.  MicroScope: a platform for microbial genome annotation and comparative genomics.

Authors:  D Vallenet; S Engelen; D Mornico; S Cruveiller; L Fleury; A Lajus; Z Rouy; D Roche; G Salvignol; C Scarpelli; C Médigue
Journal:  Database (Oxford)       Date:  2009-11-25       Impact factor: 3.451

7.  Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.

Authors:  Peter F Dunfield; Anton Yuryev; Pavel Senin; Angela V Smirnova; Matthew B Stott; Shaobin Hou; Binh Ly; Jimmy H Saw; Zhemin Zhou; Yan Ren; Jianmei Wang; Bruce W Mountain; Michelle A Crowe; Tina M Weatherby; Paul L E Bodelier; Werner Liesack; Lu Feng; Lei Wang; Maqsudul Alam
Journal:  Nature       Date:  2007-11-14       Impact factor: 49.962

8.  Methane oxidation at 55 degrees C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum.

Authors:  Tajul Islam; Sigmund Jensen; Laila Johanne Reigstad; Oivind Larsen; Nils-Kåre Birkeland
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-02       Impact factor: 11.205

9.  Structural analysis of the fds operon encoding the NAD+-linked formate dehydrogenase of Ralstonia eutropha.

Authors:  J I Oh; B Bowien
Journal:  J Biol Chem       Date:  1998-10-09       Impact factor: 5.157

10.  Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia.

Authors:  Shaobin Hou; Kira S Makarova; Jimmy H W Saw; Pavel Senin; Benjamin V Ly; Zhemin Zhou; Yan Ren; Jianmei Wang; Michael Y Galperin; Marina V Omelchenko; Yuri I Wolf; Natalya Yutin; Eugene V Koonin; Matthew B Stott; Bruce W Mountain; Michelle A Crowe; Angela V Smirnova; Peter F Dunfield; Lu Feng; Lei Wang; Maqsudul Alam
Journal:  Biol Direct       Date:  2008-07-01       Impact factor: 4.540
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  18 in total

1.  Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol.

Authors:  Alexey Vorobev; Sheeja Jagadevan; Sunit Jain; Karthik Anantharaman; Gregory J Dick; Stéphane Vuilleumier; Jeremy D Semrau
Journal:  Appl Environ Microbiol       Date:  2014-03-07       Impact factor: 4.792

2.  Expanding the verrucomicrobial methanotrophic world: description of three novel species of Methylacidimicrobium gen. nov.

Authors:  Muriel C F van Teeseling; Arjan Pol; Harry R Harhangi; Sietse van der Zwart; Mike S M Jetten; Huub J M Op den Camp; Laura van Niftrik
Journal:  Appl Environ Microbiol       Date:  2014-08-29       Impact factor: 4.792

3.  Metabolic Regulation of "Ca. Methylacidiphilum Fumariolicum" SolV Cells Grown Under Different Nitrogen and Oxygen Limitations.

Authors:  Ahmad F Khadem; Arjan Pol; Adam S Wieczorek; Mike S M Jetten; Huub J M Op den Camp
Journal:  Front Microbiol       Date:  2012-07-25       Impact factor: 5.640

4.  Genomic and Physiological Analysis of Carbon Storage in the Verrucomicrobial Methanotroph "Ca. Methylacidiphilum Fumariolicum" SolV.

Authors:  Ahmad F Khadem; Muriel C F van Teeseling; Laura van Niftrik; Mike S M Jetten; Huub J M Op den Camp; Arjan Pol
Journal:  Front Microbiol       Date:  2012-09-28       Impact factor: 5.640

5.  Open and Lys-His Hexacoordinated Closed Structures of a Globin with Swapped Proximal and Distal Sites.

Authors:  Aik-Hong Teh; Jennifer A Saito; Nazalan Najimudin; Maqsudul Alam
Journal:  Sci Rep       Date:  2015-06-22       Impact factor: 4.379

6.  Dispensability of zinc and the putative zinc-binding domain in bacterial glutamyl-tRNA synthetase.

Authors:  Nipa Chongdar; Saumya Dasgupta; Ajit Bikram Datta; Gautam Basu
Journal:  Biosci Rep       Date:  2015-03-31       Impact factor: 3.840

7.  The genomic landscape of the verrucomicrobial methanotroph Methylacidiphilum fumariolicum SolV.

Authors:  Seyed Yahya Anvar; Jeroen Frank; Arjan Pol; Arnoud Schmitz; Ken Kraaijeveld; Johan T den Dunnen; Huub Jm Op den Camp
Journal:  BMC Genomics       Date:  2014-10-20       Impact factor: 3.969

Review 8.  Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker.

Authors:  Claudia Knief
Journal:  Front Microbiol       Date:  2015-12-15       Impact factor: 5.640

9.  Diverse electron sources support denitrification under hypoxia in the obligate methanotroph Methylomicrobium album strain BG8.

Authors:  K Dimitri Kits; Dustin J Campbell; Albert R Rosana; Lisa Y Stein
Journal:  Front Microbiol       Date:  2015-10-06       Impact factor: 5.640

10.  Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2.

Authors:  Bomba Dam; Somasri Dam; Jochen Blom; Werner Liesack
Journal:  PLoS One       Date:  2013-10-10       Impact factor: 3.240
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