Literature DB >> 20456492

Inferring fitness landscapes.

Ruth G Shaw1, Charles J Geyer.   

Abstract

Since 1983, study of natural selection has relied heavily on multiple regression of fitness on the values for a set of traits via ordinary least squares (OLSs), as proposed by Lande and Arnold, to obtain an estimate of the quadratic relationship between fitness and the traits, the fitness surface. However, well-known statistical problems with this approach can affect inferences about selection. One key concern is that measures of lifetime fitness do not conform to a normal or any other standard sampling distribution, as needed to justify the usual statistical tests. Another is that OLS may yield an estimate of the sign of the fitness function's curvature that is opposite to the truth. We here show that the recently developed aster modeling approach, which explicitly models the components of fitness as the basis for inferences about lifetime fitness, eliminates these problems. We illustrate selection analysis via aster using simulated datasets involving five fitness components expressed in each of four years. We demonstrate that aster analysis yields accurate estimates of the fitness function in cases in which OLS misleads, as well as accurate confidence regions for directional selection gradients. Further, to evaluate selection when many traits are under consideration, we recommend model selection by information criteria and frequentist model averaging.
© 2010 The Author(s). Journal compilation © 2010 The Society for the Study of Evolution.

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Year:  2010        PMID: 20456492     DOI: 10.1111/j.1558-5646.2010.01010.x

Source DB:  PubMed          Journal:  Evolution        ISSN: 0014-3820            Impact factor:   3.694


  15 in total

1.  Differences in the temporal dynamics of phenotypic selection among fitness components in the wild.

Authors:  Adam M Siepielski; Joseph D DiBattista; Jeffrey A Evans; Stephanie M Carlson
Journal:  Proc Biol Sci       Date:  2010-11-03       Impact factor: 5.349

Review 2.  Quantitative genetic study of the adaptive process.

Authors:  R G Shaw; F H Shaw
Journal:  Heredity (Edinb)       Date:  2013-05-29       Impact factor: 3.821

3.  Quantifying selective pressures driving bacterial evolution using lineage analysis.

Authors:  Guillaume Lambert; Edo Kussell
Journal:  Phys Rev X       Date:  2015 Jan-Mar       Impact factor: 15.762

4.  Modelling heterogeneity among fitness functions using random regression.

Authors:  Richard J Reynolds; Gustavo de Los Campos; Scott P Egan; James R Ott
Journal:  Methods Ecol Evol       Date:  2015-08-11       Impact factor: 7.781

5.  Modularity: genes, development and evolution.

Authors:  Diogo Melo; Arthur Porto; James M Cheverud; Gabriel Marroig
Journal:  Annu Rev Ecol Evol Syst       Date:  2016-09-07       Impact factor: 13.915

6.  Genotype to phenotype mapping and the fitness landscape of the E. coli lac promoter.

Authors:  Jakub Otwinowski; Ilya Nemenman
Journal:  PLoS One       Date:  2013-05-01       Impact factor: 3.240

7.  Selection on crop-derived traits and QTL in sunflower (Helianthus annuus) crop-wild hybrids under water stress.

Authors:  Birkin R Owart; Jonathan Corbi; John M Burke; Jennifer M Dechaine
Journal:  PLoS One       Date:  2014-07-21       Impact factor: 3.240

8.  Multivariate sexual selection on male song structure in wild populations of sagebrush crickets, Cyphoderris strepitans (Orthoptera: Haglidae).

Authors:  Geoffrey D Ower; Kevin A Judge; Sandra Steiger; Kyle J Caron; Rebecca A Smith; John Hunt; Scott K Sakaluk
Journal:  Ecol Evol       Date:  2013-09-02       Impact factor: 2.912

9.  The importance of selection at the level of the pair over 25 years in a natural population of birds.

Authors:  Mats Björklund; Lars Gustafsson
Journal:  Ecol Evol       Date:  2013-10-22       Impact factor: 2.912

10.  Exploring ammonium tolerance in a large panel of Arabidopsis thaliana natural accessions.

Authors:  Asier Sarasketa; María Begoña González-Moro; Carmen González-Murua; Daniel Marino
Journal:  J Exp Bot       Date:  2014-09-09       Impact factor: 6.992

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