Literature DB >> 15352847

Competition of hydrophobic and Coulombic interactions between nanosized solutes.

J Dzubiella1, J-P Hansen.   

Abstract

The solvation of charged, nanometer-sized spherical solutes in water, and the effective, solvent-induced force between two such solutes are investigated by constant temperature and pressure molecular dynamics simulations of model solutes carrying various charge patterns. The results for neutral solutes agree well with earlier findings, and with predictions of simple macroscopic considerations: substantial hydrophobic attraction may be traced back to strong depletion ("drying") of the solvent between the solutes. This hydrophobic attraction is strongly reduced when the solutes are uniformly charged, and the total force becomes repulsive at sufficiently high charge; there is a significant asymmetry between anionic and cationic solute pairs, the latter experiencing a lesser hydrophobic attraction. The situation becomes more complex when the solutes carry discrete (rather than uniform) charge patterns. Due to antagonistic effects of the resulting hydrophilic and hydrophobic "patches" on the solvent molecules, water is once more significantly depleted around the solutes, and the effective interaction reverts to being mainly attractive, despite the direct electrostatic repulsion between solutes. Examination of a highly coarse-grained configurational probability density shows that the relative orientation of the two solutes is very different in explicit solvent, compared to the prediction of the crude implicit solvent representation. The present study strongly suggests that a realistic modeling of the charge distribution on the surface of globular proteins, as well as the molecular treatment of water, are essential prerequisites for any reliable study of protein aggregation.

Entities:  

Year:  2004        PMID: 15352847     DOI: 10.1063/1.1783274

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Charge, hydrophobicity, and confined water: putting past simulations into a simple theoretical framework.

Authors:  Jeremy L England; Vijay S Pande
Journal:  Biochem Cell Biol       Date:  2010-04       Impact factor: 3.626

2.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

Authors:  Bob Eisenberg; Yunkyong Hyon; Chun Liu
Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

3.  Probing solvation decay length in order to characterize hydrophobicity-induced bead-bead attractive interactions in polymer chains.

Authors:  Siddhartha Das; Suman Chakraborty
Journal:  J Mol Model       Date:  2010-11-26       Impact factor: 1.810

4.  Potential for modulation of the hydrophobic effect inside chaperonins.

Authors:  Jeremy L England; Vijay S Pande
Journal:  Biophys J       Date:  2008-07-03       Impact factor: 4.033

Review 5.  Biomolecular electrostatics and solvation: a computational perspective.

Authors:  Pengyu Ren; Jaehun Chun; Dennis G Thomas; Michael J Schnieders; Marcelo Marucho; Jiajing Zhang; Nathan A Baker
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

6.  Competition of electrostatic and hydrophobic interactions between small hydrophobes and model enclosures.

Authors:  Lingle Wang; Richard A Friesner; B J Berne
Journal:  J Phys Chem B       Date:  2010-06-03       Impact factor: 2.991

7.  Charge hydration asymmetry: the basic principle and how to use it to test and improve water models.

Authors:  Abhishek Mukhopadhyay; Andrew T Fenley; Igor S Tolokh; Alexey V Onufriev
Journal:  J Phys Chem B       Date:  2012-08-07       Impact factor: 2.991

8.  Asymmetric van der Waals forces drive orientation of compositionally anisotropic nanocylinders within smectic arrays: experiment and simulation.

Authors:  Benjamin D Smith; Kristen A Fichthorn; David J Kirby; Lisa M Quimby; Derek A Triplett; Pedro González; Darimar Hernández; Christine D Keating
Journal:  ACS Nano       Date:  2013-12-11       Impact factor: 15.881

9.  Non-bulk-like solvent behavior in the ribosome exit tunnel.

Authors:  Del Lucent; Christopher D Snow; Colin Echeverría Aitken; Vijay S Pande
Journal:  PLoS Comput Biol       Date:  2010-10-21       Impact factor: 4.475

10.  Introducing Charge Hydration Asymmetry into the Generalized Born Model.

Authors:  Abhishek Mukhopadhyay; Boris H Aguilar; Igor S Tolokh; Alexey V Onufriev
Journal:  J Chem Theory Comput       Date:  2014-02-18       Impact factor: 6.006

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