Literature DB >> 20452218

Impact of recombination on bacterial evolution.

Xavier Didelot1, Martin C J Maiden.   

Abstract

Genetic exchange plays a defining role in the evolution of many bacteria. The recent accumulation of nucleotide sequence data from multiple members of diverse bacterial genera has facilitated comparative studies that have revealed many features of this process. Here we focus on genetic exchange that has involved homologous recombination and illustrate how nucleotide sequence data have furthered our understanding of: (i) the frequency of recombination; (ii) the impact of recombination in different parts of the genome; and (iii) patterns of gene flow within bacterial populations. Summarizing the results obtained for a range of bacteria, we survey evidence indicating that the extent and nature of recombination vary widely among microbiological species and often among lineages assigned to the same microbiological species. These results have important implications in studies ranging from epidemiological investigations to examination of the bacterial species problem. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20452218      PMCID: PMC3985120          DOI: 10.1016/j.tim.2010.04.002

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  76 in total

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Authors:  Lise Petersen; Jonathan P Bollback; Matt Dimmic; Melissa Hubisz; Rasmus Nielsen
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2.  Inference of bacterial microevolution using multilocus sequence data.

Authors:  Xavier Didelot; Daniel Falush
Journal:  Genetics       Date:  2006-12-06       Impact factor: 4.562

Review 3.  Comparative genomics and the evolution of prokaryotes.

Authors:  Sophie Abby; Vincent Daubin
Journal:  Trends Microbiol       Date:  2007-02-07       Impact factor: 17.079

Review 4.  Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens.

Authors:  Mark Achtman
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

5.  High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.

Authors:  Kathryn E Holt; Julian Parkhill; Camila J Mazzoni; Philippe Roumagnac; François-Xavier Weill; Ian Goodhead; Richard Rance; Stephen Baker; Duncan J Maskell; John Wain; Christiane Dolecek; Mark Achtman; Gordon Dougan
Journal:  Nat Genet       Date:  2008-07-27       Impact factor: 38.330

6.  Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes.

Authors:  Renato H Orsi; Qi Sun; Martin Wiedmann
Journal:  BMC Evol Biol       Date:  2008-08-12       Impact factor: 3.260

7.  Global genetic population structure of Bacillus anthracis.

Authors:  Matthew N Van Ert; W Ryan Easterday; Lynn Y Huynh; Richard T Okinaka; Martin E Hugh-Jones; Jacques Ravel; Shaylan R Zanecki; Talima Pearson; Tatum S Simonson; Jana M U'Ren; Sergey M Kachur; Rebecca R Leadem-Dougherty; Shane D Rhoton; Guenevier Zinser; Jason Farlow; Pamala R Coker; Kimothy L Smith; Bingxiang Wang; Leo J Kenefic; Claire M Fraser-Liggett; David M Wagner; Paul Keim
Journal:  PLoS One       Date:  2007-05-23       Impact factor: 3.240

8.  Host-associated genetic import in Campylobacter jejuni.

Authors:  Noel D McCarthy; Frances M Colles; Kate E Dingle; Mary C Bagnall; Georgina Manning; Martin C J Maiden; Daniel Falush
Journal:  Emerg Infect Dis       Date:  2007-02       Impact factor: 6.883

9.  Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition.

Authors:  Tristan Lefébure; Michael J Stanhope
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  A new perspective on Listeria monocytogenes evolution.

Authors:  Marie Ragon; Thierry Wirth; Florian Hollandt; Rachel Lavenir; Marc Lecuit; Alban Le Monnier; Sylvain Brisse
Journal:  PLoS Pathog       Date:  2008-09-05       Impact factor: 6.823

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  154 in total

1.  Inference of homologous recombination in bacteria using whole-genome sequences.

Authors:  Xavier Didelot; Daniel Lawson; Aaron Darling; Daniel Falush
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

2.  Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing.

Authors:  Riikka Laukkanen-Ninios; Xavier Didelot; Keith A Jolley; Giovanna Morelli; Vartul Sangal; Paula Kristo; Carina Brehony; Priscilla F M Imori; Hiroshi Fukushima; Anja Siitonen; Galina Tseneva; Ekaterina Voskressenskaya; Juliana P Falcao; Hannu Korkeala; Martin C J Maiden; Camila Mazzoni; Elisabeth Carniel; Mikael Skurnik; Mark Achtman
Journal:  Environ Microbiol       Date:  2011-09-27       Impact factor: 5.491

Review 3.  Genetic variation in Chlamydia trachomatis and their hosts: impact on disease severity and tissue tropism.

Authors:  Hossam Abdelsamed; Jan Peters; Gerald I Byrne
Journal:  Future Microbiol       Date:  2013-09       Impact factor: 3.165

4.  Intersubspecific recombination in Xylella fastidiosa Strains native to the United States: infection of novel hosts associated with an unsuccessful invasion.

Authors:  Leonard Nunney; Donald L Hopkins; Lisa D Morano; Stephanie E Russell; Richard Stouthamer
Journal:  Appl Environ Microbiol       Date:  2013-12-02       Impact factor: 4.792

Review 5.  Predictive biology: modelling, understanding and harnessing microbial complexity.

Authors:  Allison J Lopatkin; James J Collins
Journal:  Nat Rev Microbiol       Date:  2020-05-29       Impact factor: 60.633

6.  DNA-damaging agents induce the RecA-independent homologous recombination functions of integrating conjugative elements of the SXT/R391 family.

Authors:  Geneviève Garriss; Dominic Poulin-Laprade; Vincent Burrus
Journal:  J Bacteriol       Date:  2013-02-22       Impact factor: 3.490

7.  Growth phase-specific evolutionary benefits of natural transformation in Acinetobacter baylyi.

Authors:  Ane L G Utnes; Vidar Sørum; Nils Hülter; Raul Primicerio; Joachim Hegstad; Julia Kloos; Kaare M Nielsen; Pål J Johnsen
Journal:  ISME J       Date:  2015-04-07       Impact factor: 10.302

8.  Phylogenetic Methods for Genome-Wide Association Studies in Bacteria.

Authors:  Xavier Didelot
Journal:  Methods Mol Biol       Date:  2021

9.  A novel function for the competence inducing peptide, XIP, as a cell death effector of Streptococcus mutans.

Authors:  Iwona B Wenderska; Nikola Lukenda; Martha Cordova; Nathan Magarvey; Dennis G Cvitkovitch; Dilani B Senadheera
Journal:  FEMS Microbiol Lett       Date:  2012-09-26       Impact factor: 2.742

10.  Multi-locus sequence typing of enteroaggregative Escherichia coli isolates from Nigerian children uncovers multiple lineages.

Authors:  Iruka N Okeke; Faith Wallace-Gadsden; Hannah R Simons; Nicholas Matthews; Amy S Labar; Jennifer Hwang; John Wain
Journal:  PLoS One       Date:  2010-11-23       Impact factor: 3.240

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