Literature DB >> 17289390

Comparative genomics and the evolution of prokaryotes.

Sophie Abby1, Vincent Daubin.   

Abstract

Although biologists have long recognized the importance of studying evolution to understand the organization of living organisms, only with the development of genomics have evolutionary studies become part of their routine toolkit. Placing genomes into an evolutionary framework has proved useful for understanding the functioning of organisms. It has also substantially increased understanding of the processes by which genomes evolve and led to a re-evaluation of our representation of the diversity and the history of life. In this review, we present some of the most important recent advances and promising leads in the field of microbial evolutionary genomics.

Mesh:

Year:  2007        PMID: 17289390     DOI: 10.1016/j.tim.2007.01.007

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  29 in total

Review 1.  Impact of recombination on bacterial evolution.

Authors:  Xavier Didelot; Martin C J Maiden
Journal:  Trends Microbiol       Date:  2010-05-06       Impact factor: 17.079

Review 2.  Aegerolysins: structure, function, and putative biological role.

Authors:  Sabina Berne; Ljerka Lah; Kristina Sepcić
Journal:  Protein Sci       Date:  2009-04       Impact factor: 6.725

Review 3.  Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.

Authors:  Sacha A F T van Hijum; Marnix H Medema; Oscar P Kuipers
Journal:  Microbiol Mol Biol Rev       Date:  2009-09       Impact factor: 11.056

4.  Gene order phylogeny and the evolution of methanogens.

Authors:  Haiwei Luo; Zhiyi Sun; William Arndt; Jian Shi; Robert Friedman; Jijun Tang
Journal:  PLoS One       Date:  2009-06-29       Impact factor: 3.240

5.  Genomic and systems evolution in Vibrionaceae species.

Authors:  Jianying Gu; Jennifer Neary; Hong Cai; Audrey Moshfeghian; Stephen A Rodriguez; Timothy G Lilburn; Yufeng Wang
Journal:  BMC Genomics       Date:  2009-07-07       Impact factor: 3.969

6.  Biogeography of the Sulfolobus islandicus pan-genome.

Authors:  Michael L Reno; Nicole L Held; Christopher J Fields; Patricia V Burke; Rachel J Whitaker
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-12       Impact factor: 11.205

7.  Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei.

Authors:  Stéphane Chaillou; Marie Daty; Fabienne Baraige; Anne-Marie Dudez; Patricia Anglade; Rhys Jones; Carl-Alfred Alpert; Marie-Christine Champomier-Vergès; Monique Zagorec
Journal:  Appl Environ Microbiol       Date:  2008-12-29       Impact factor: 4.792

8.  Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli.

Authors:  Víctor González; José L Acosta; Rosa I Santamaría; Patricia Bustos; José L Fernández; Ismael L Hernández González; Rafael Díaz; Margarita Flores; Rafael Palacios; Jaime Mora; Guillermo Dávila
Journal:  Appl Environ Microbiol       Date:  2010-01-04       Impact factor: 4.792

Review 9.  Coevolution of the Organization and Structure of Prokaryotic Genomes.

Authors:  Marie Touchon; Eduardo P C Rocha
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-01-04       Impact factor: 10.005

10.  Metagenome fragment classification using N-mer frequency profiles.

Authors:  Gail Rosen; Elaine Garbarine; Diamantino Caseiro; Robi Polikar; Bahrad Sokhansanj
Journal:  Adv Bioinformatics       Date:  2008-11-16
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