Literature DB >> 20448148

A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity.

Daniel Cifuentes1, Huiling Xue, David W Taylor, Heather Patnode, Yuichiro Mishima, Sihem Cheloufi, Enbo Ma, Shrikant Mane, Gregory J Hannon, Nathan D Lawson, Scot A Wolfe, Antonio J Giraldez.   

Abstract

Dicer is a central enzyme in microRNA (miRNA) processing. We identified a Dicer-independent miRNA biogenesis pathway that uses Argonaute2 (Ago2) slicer catalytic activity. In contrast to other miRNAs, miR-451 levels were refractory to dicer loss of function but were reduced in MZago2 (maternal-zygotic) mutants. We found that pre-miR-451 processing requires Ago2 catalytic activity in vivo. MZago2 mutants showed delayed erythropoiesis that could be rescued by wild-type Ago2 or miR-451-duplex but not by catalytically dead Ago2. Changing the secondary structure of Dicer-dependent miRNAs to mimic that of pre-miR-451 restored miRNA function and rescued developmental defects in MZdicer mutants, indicating that the pre-miRNA secondary structure determines the processing pathway in vivo. We propose that Ago2-mediated cleavage of pre-miRNAs, followed by uridylation and trimming, generates functional miRNAs independently of Dicer.

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Year:  2010        PMID: 20448148      PMCID: PMC3093307          DOI: 10.1126/science.1190809

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  28 in total

1.  Argonaute2, a link between genetic and biochemical analyses of RNAi.

Authors:  S M Hammond; S Boettcher; A A Caudy; R Kobayashi; G J Hannon
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

2.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

3.  Argonaute2 is the catalytic engine of mammalian RNAi.

Authors:  Jidong Liu; Michelle A Carmell; Fabiola V Rivas; Carolyn G Marsden; J Michael Thomson; Ji-Joon Song; Scott M Hammond; Leemor Joshua-Tor; Gregory J Hannon
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

4.  Synthetic shRNAs as potent RNAi triggers.

Authors:  Despina Siolas; Cara Lerner; Julja Burchard; Wei Ge; Peter S Linsley; Patrick J Paddison; Gregory J Hannon; Michele A Cleary
Journal:  Nat Biotechnol       Date:  2004-12-26       Impact factor: 54.908

5.  MicroRNAs regulate brain morphogenesis in zebrafish.

Authors:  Antonio J Giraldez; Ryan M Cinalli; Margaret E Glasner; Anton J Enright; J Michael Thomson; Scott Baskerville; Scott M Hammond; David P Bartel; Alexander F Schier
Journal:  Science       Date:  2005-03-17       Impact factor: 47.728

6.  Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes.

Authors:  Christian Matranga; Yukihide Tomari; Chanseok Shin; David P Bartel; Phillip D Zamore
Journal:  Cell       Date:  2005-11-03       Impact factor: 41.582

Review 7.  MicroRNA assassins: factors that regulate the disappearance of miRNAs.

Authors:  Zoya S Kai; Amy E Pasquinelli
Journal:  Nat Struct Mol Biol       Date:  2010-01       Impact factor: 15.369

8.  Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.

Authors:  Antonio J Giraldez; Yuichiro Mishima; Jason Rihel; Russell J Grocock; Stijn Van Dongen; Kunio Inoue; Anton J Enright; Alexander F Schier
Journal:  Science       Date:  2006-02-16       Impact factor: 47.728

9.  The microRNA-producing enzyme Dicer1 is essential for zebrafish development.

Authors:  Erno Wienholds; Marco J Koudijs; Freek J M van Eeden; Edwin Cuppen; Ronald H A Plasterk
Journal:  Nat Genet       Date:  2003-10-05       Impact factor: 38.330

10.  Hematopoietic mutations in the zebrafish.

Authors:  B M Weinstein; A F Schier; S Abdelilah; J Malicki; L Solnica-Krezel; D L Stemple; D Y Stainier; F Zwartkruis; W Driever; M C Fishman
Journal:  Development       Date:  1996-12       Impact factor: 6.868

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  420 in total

1.  Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs.

Authors:  Jakub O Westholm; Erik Ladewig; Katsutomo Okamura; Nicolas Robine; Eric C Lai
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

2.  Precursor microRNA-programmed silencing complex assembly pathways in mammals.

Authors:  Xuhang Liu; Dong-Yan Jin; Michael T McManus; Zissimos Mourelatos
Journal:  Mol Cell       Date:  2012-04-12       Impact factor: 17.970

3.  Inducible deletion of epidermal Dicer and Drosha reveals multiple functions for miRNAs in postnatal skin.

Authors:  Monica Teta; Yeon Sook Choi; Tishina Okegbe; Gabrielle Wong; Oliver H Tam; Mark M W Chong; John T Seykora; Andras Nagy; Dan R Littman; Thomas Andl; Sarah E Millar
Journal:  Development       Date:  2012-04       Impact factor: 6.868

Review 4.  The regulatory activities of plant microRNAs: a more dynamic perspective.

Authors:  Yijun Meng; Chaogang Shao; Huizhong Wang; Ming Chen
Journal:  Plant Physiol       Date:  2011-10-14       Impact factor: 8.340

5.  Transcriptional silencing by hairpin RNAs complementary to a gene promoter.

Authors:  Yongjun Chu; Roya Kalantari; David W Dodd; David R Corey
Journal:  Nucleic Acid Ther       Date:  2012-06       Impact factor: 5.486

Review 6.  General principals of miRNA biogenesis and regulation in the brain.

Authors:  Dónal O'Carroll; Anne Schaefer
Journal:  Neuropsychopharmacology       Date:  2012-06-06       Impact factor: 7.853

7.  Evidence for a cytoplasmic microprocessor of pri-miRNAs.

Authors:  Jillian S Shapiro; Ryan A Langlois; Alissa M Pham; Benjamin R Tenoever
Journal:  RNA       Date:  2012-05-25       Impact factor: 4.942

Review 8.  The widespread regulation of microRNA biogenesis, function and decay.

Authors:  Jacek Krol; Inga Loedige; Witold Filipowicz
Journal:  Nat Rev Genet       Date:  2010-07-27       Impact factor: 53.242

9.  miR-451 protects against erythroid oxidant stress by repressing 14-3-3zeta.

Authors:  Duonan Yu; Camila O dos Santos; Guowei Zhao; Jing Jiang; Julio D Amigo; Eugene Khandros; Louis C Dore; Yu Yao; Janine D'Souza; Zhe Zhang; Saghi Ghaffari; John Choi; Sherree Friend; Wei Tong; Jordan S Orange; Barry H Paw; Mitchell J Weiss
Journal:  Genes Dev       Date:  2010-08-01       Impact factor: 11.361

10.  RNase III-independent microRNA biogenesis in mammalian cells.

Authors:  Thomas Maurin; Demián Cazalla; Shiuan Yang; Diane Bortolamiol-Becet; Eric C Lai
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

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