Literature DB >> 20445259

Crystallization and preliminary X-ray diffraction analysis of West Nile virus.

Bärbel Kaufmann1, Pavel Plevka, Richard J Kuhn, Michael G Rossmann.   

Abstract

West Nile virus, a human pathogen, is closely related to other medically important flaviviruses of global impact such as dengue virus. The infectious virus was purified from cell culture using polyethylene glycol (PEG) precipitation and density-gradient centrifugation. Thin amorphously shaped crystals of the lipid-enveloped virus were grown in quartz capillaries equilibrated by vapor diffusion. Crystal diffraction extended at best to a resolution of about 25 A using synchrotron radiation. A preliminary analysis of the diffraction images indicated that the crystals had unit-cell parameters a approximately b approximately 480 A, gamma = 120 degrees , suggesting a tight hexagonal packing of one virus particle per unit cell.

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Year:  2010        PMID: 20445259      PMCID: PMC2864692          DOI: 10.1107/S1744309110009899

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Structure of dengue virus: implications for flavivirus organization, maturation, and fusion.

Authors:  Richard J Kuhn; Wei Zhang; Michael G Rossmann; Sergei V Pletnev; Jeroen Corver; Edith Lenches; Christopher T Jones; Suchetana Mukhopadhyay; Paul R Chipman; Ellen G Strauss; Timothy S Baker; James H Strauss
Journal:  Cell       Date:  2002-03-08       Impact factor: 41.582

2.  Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane.

Authors:  Jaana K H Bamford; Joseph J B Cockburn; Jonathan Diprose; Jonathan M Grimes; Geoff Sutton; David I Stuart; Dennis H Bamford
Journal:  J Struct Biol       Date:  2002-08       Impact factor: 2.867

3.  Visualization of membrane protein domains by cryo-electron microscopy of dengue virus.

Authors:  Wei Zhang; Paul R Chipman; Jeroen Corver; Peter R Johnson; Ying Zhang; Suchetana Mukhopadhyay; Timothy S Baker; James H Strauss; Michael G Rossmann; Richard J Kuhn
Journal:  Nat Struct Biol       Date:  2003-10-05

4.  Conformational changes of the flavivirus E glycoprotein.

Authors:  Ying Zhang; Wei Zhang; Steven Ogata; David Clements; James H Strauss; Timothy S Baker; Richard J Kuhn; Michael G Rossmann
Journal:  Structure       Date:  2004-09       Impact factor: 5.006

5.  Crystallization of Sindbis virus and its nucleocapsid.

Authors:  S C Harrison; R K Strong; S Schlesinger; M J Schlesinger
Journal:  J Mol Biol       Date:  1992-07-05       Impact factor: 5.469

6.  Crystallization of the membrane-containing bacteriophage PRD1 in quartz capillaries by vapour diffusion.

Authors:  J J B Cockburn; J K H Bamford; J M Grimes; D H Bamford; D I Stuart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-02-21

7.  Structure of the dengue virus envelope protein after membrane fusion.

Authors:  Yorgo Modis; Steven Ogata; David Clements; Stephen C Harrison
Journal:  Nature       Date:  2004-01-22       Impact factor: 49.962

8.  A ligand-binding pocket in the dengue virus envelope glycoprotein.

Authors:  Yorgo Modis; Steven Ogata; David Clements; Stephen C Harrison
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-20       Impact factor: 11.205

9.  Solution structure of dengue virus capsid protein reveals another fold.

Authors:  Lixin Ma; Christopher T Jones; Teresa D Groesch; Richard J Kuhn; Carol Beth Post
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-01       Impact factor: 11.205

10.  West Nile virus core protein; tetramer structure and ribbon formation.

Authors:  Terje Dokland; Martin Walsh; Jason M Mackenzie; Alexander A Khromykh; Kim-Huey Ee; Sifang Wang
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

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  2 in total

Review 1.  Future prospects.

Authors:  Michael G Rossmann; Anthony J Battisti; Pavel Plevka
Journal:  Adv Protein Chem Struct Biol       Date:  2011       Impact factor: 3.507

2.  Serial femtosecond X-ray diffraction of enveloped virus microcrystals.

Authors:  Robert M Lawrence; Chelsie E Conrad; Nadia A Zatsepin; Thomas D Grant; Haiguang Liu; Daniel James; Garrett Nelson; Ganesh Subramanian; Andrew Aquila; Mark S Hunter; Mengning Liang; Sébastien Boutet; Jesse Coe; John C H Spence; Uwe Weierstall; Wei Liu; Petra Fromme; Vadim Cherezov; Brenda G Hogue
Journal:  Struct Dyn       Date:  2015-08-20       Impact factor: 2.920

  2 in total

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