Literature DB >> 20445241

The structure of mAG, a monomeric mutant of the green fluorescent protein Azami-Green, reveals the structural basis of its stable green emission.

Tatsuki Ebisawa1, Akihiro Yamamura, Yasuhiro Kameda, Kou Hayakawa, Koji Nagata, Masaru Tanokura.   

Abstract

Monomeric Azami-Green (mAG) from the stony coral Galaxea fascicularis is the first known monomeric green-emitting fluorescent protein that is not a variant of Aequorea victoria green fluorescent protein (avGFP). These two green fluorescent proteins are only 27% identical in their amino-acid sequences. mAG is more similar in its amino-acid sequence to four fluorescent proteins: Dendra2 (a green-to-red irreversibly photoconverting fluorescent protein), Dronpa (a bright-and-dark reversibly photoswitchable fluorescent protein), KikG (a tetrameric green-emitting fluorescent protein) and Kaede (another green-to-red irreversibly photoconverting fluorescent protein). To reveal the structural basis of stable green emission by mAG, the 2.2 A crystal structure of mAG has been determined and compared with the crystal structures of avGFP, Dronpa, Dendra2, Kaede and KikG. The structural comparison revealed that the chromophore formed by Gln62-Tyr63-Gly64 (QYG) and the fixing of the conformation of the imidazole ring of His193 by hydrogen bonds and van der Waals contacts involving His193, Arg66 and Thr69 are likely to be required for the stable green emission of mAG. The crystal structure of mAG will contribute to the design and development of new monomeric fluorescent proteins with faster maturation, brighter fluorescence, improved photostability, new colours and other preferable properties as alternatives to avGFP and its variants.

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Year:  2010        PMID: 20445241      PMCID: PMC2864674          DOI: 10.1107/S1744309110011127

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

1.  An approach to multi-copy search in molecular replacement.

Authors:  A Vagin; A Teplyakov
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2.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

3.  Automated refinement of protein models.

Authors:  V S Lamzin; K S Wilson
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Authors:  Annette Müller-Taubenberger; Kurt I Anderson
Journal:  Appl Microbiol Biotechnol       Date:  2007-08-18       Impact factor: 4.813

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Authors:  R Y Tsien
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

7.  The molecular structure of green fluorescent protein.

Authors:  F Yang; L G Moss; G N Phillips
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8.  Crystallization and preliminary X-ray analysis of a monomeric mutant of Azami-Green (mAG), an Aequorea victoria green fluorescent protein-like green-emitting fluorescent protein from the stony coral Galaxea fascicularis.

Authors:  Tatsuki Ebisawa; Akihiro Yamamura; Yasuhiro Kameda; Kou Hayakawa; Koji Nagata; Masaru Tanokura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-11-27

9.  Structural basis of enhanced photoconversion yield in green fluorescent protein-like protein Dendra2.

Authors:  Virgile Adam; Karin Nienhaus; Dominique Bourgeois; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2009-06-09       Impact factor: 3.162

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Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

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