Literature DB >> 20443167

Advances in protein NMR provided by the NIGMS Protein Structure Initiative: impact on drug discovery.

Gaetano T Montelione1, Thomas Szyperski.   

Abstract

Rational drug design relies on the 3D structures of biological macromolecules, with a particular emphasis on proteins. The structural genomics-based high-throughput structure determination platforms established by the Protein Structure Initiative (PSI) of the National Institute of General Medical Science (NIGMS) of the NIH are uniquely suited to provide these structures. NMR plays a critical role in structure determination because many important protein targets do not form the single crystals required for X-ray diffraction. NMR can provide valuable structural and dynamic information on proteins and their drug complexes that cannot be obtained with X-ray crystallography. This review discusses recent advances in NMR that have been driven by structural genomics projects. These advances suggest that the future discovery and design of drugs can increasingly rely on protocols using NMR approaches for the rapid and accurate determination of structures.

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Year:  2010        PMID: 20443167      PMCID: PMC4002360     

Source DB:  PubMed          Journal:  Curr Opin Drug Discov Devel        ISSN: 1367-6733


  92 in total

Review 1.  Automated analysis of NMR assignments and structures for proteins.

Authors:  H N Moseley; G T Montelione
Journal:  Curr Opin Struct Biol       Date:  1999-10       Impact factor: 6.809

2.  Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics.

Authors:  Yuanpeng J Huang; Robert Powers; Gaetano T Montelione
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

3.  Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium.

Authors:  Thomas B Acton; Kristin C Gunsalus; Rong Xiao; Li Chung Ma; James Aramini; Michael C Baran; Yi-Wen Chiang; Teresa Climent; Bonnie Cooper; Natalia G Denissova; Shawn M Douglas; John K Everett; Chi Kent Ho; Daphne Macapagal; Paranji K Rajan; Ritu Shastry; Liang-Yu Shih; G V T Swapna; Michael Wilson; Margaret Wu; Mark Gerstein; Masayori Inouye; John F Hunt; Gaetano T Montelione
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

4.  An integrated platform for automated analysis of protein NMR structures.

Authors:  Yuanpeng Janet Huang; Hunter N B Moseley; Michael C Baran; Cheryl Arrowsmith; Robert Powers; Roberto Tejero; Thomas Szyperski; Gaetano T Montelione
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

Review 5.  Structure calculation of biological macromolecules from NMR data.

Authors:  P Güntert
Journal:  Q Rev Biophys       Date:  1998-05       Impact factor: 5.318

6.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

7.  Automated analysis of protein NMR assignments using methods from artificial intelligence.

Authors:  D E Zimmerman; C A Kulikowski; Y Huang; W Feng; M Tashiro; S Shimotakahara; C Chien; R Powers; G T Montelione
Journal:  J Mol Biol       Date:  1997-06-20       Impact factor: 5.469

8.  AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR.

Authors:  R A Laskowski; J A Rullmannn; M W MacArthur; R Kaptein; J M Thornton
Journal:  J Biomol NMR       Date:  1996-12       Impact factor: 2.835

9.  Global folds of highly deuterated, methyl-protonated proteins by multidimensional NMR.

Authors:  K H Gardner; M K Rosen; L E Kay
Journal:  Biochemistry       Date:  1997-02-11       Impact factor: 3.162

10.  Subunit-specific backbone NMR assignments of a 64 kDa trp repressor/DNA complex: a role for N-terminal residues in tandem binding.

Authors:  X Shan; K H Gardner; D R Muhandiram; L E Kay; C H Arrowsmith
Journal:  J Biomol NMR       Date:  1998-04       Impact factor: 2.835

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  6 in total

Review 1.  Exploring chemical space for drug discovery using the chemical universe database.

Authors:  Jean-Louis Reymond; Mahendra Awale
Journal:  ACS Chem Neurosci       Date:  2012-04-25       Impact factor: 4.418

2.  First experiences with semi-autonomous robotic harvesting of protein crystals.

Authors:  Robert Viola; Jace Walsh; Alex Melka; Wesley Womack; Sean Murphy; Alan Riboldi-Tunnicliffe; Bernhard Rupp
Journal:  J Struct Funct Genomics       Date:  2011-03-23

3.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

4.  Spatially selective heteronuclear multiple-quantum coherence spectroscopy for biomolecular NMR studies.

Authors:  Bharathwaj Sathyamoorthy; David M Parish; Gaetano T Montelione; Rong Xiao; Thomas Szyperski
Journal:  Chemphyschem       Date:  2014-04-30       Impact factor: 3.102

5.  AlphaFold Models of Small Proteins Rival the Accuracy of Solution NMR Structures.

Authors:  Roberto Tejero; Yuanpeng Janet Huang; Theresa A Ramelot; Gaetano T Montelione
Journal:  Front Mol Biosci       Date:  2022-06-13

6.  The Protein Structure Initiative: achievements and visions for the future.

Authors:  Gaetano T Montelione
Journal:  F1000 Biol Rep       Date:  2012-04-02
  6 in total

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