Literature DB >> 20423111

Geometry and efficacy of cross-strand Trp/Trp, Trp/Tyr, and Tyr/Tyr aromatic interaction in a beta-hairpin peptide.

Ling Wu1, Dan McElheny, Takahiro Takekiyo, Timothy A Keiderling.   

Abstract

The Trpzip2 peptide (WTWENGKWTWK-NH(2)), designed by Cochran and co-workers, contains two pairs of Trp's having cross-strand interaction and forms a stable antiparallel beta-hairpin. In order to study the geometries and effects on the structure and stability of different aromatic interactions, selected tryptophan residues were substituted with Tyr to get three Trpzip2 mutants with different Trp/Trp, Trp/Tyr, and Tyr/Tyr interacting pairs. Their native-state structures were determined using two-dimensional (2D) NMR and shown to have the same cross-strand edge-to-face Trp/Trp interaction as that in Trpzip2 for the Trp/Trp pair. The analogous Trp/Tyr and Tyr/Tyr pairs also tended to have an edge-to-face geometry. The effects of specific Trp/Trp, Trp/Tyr, and Tyr/Tyr interactions on hairpin stability were studied by varying temperature and monitoring structure with electronic circular dichroism (CD) and infrared (IR) absorption spectra. IR and CD temperature variations were fit to a two-state model that yielded lower T(m) values for Tyr containing mutants, indicating that Trp/Tyr and Tyr/Tyr interactions have less contribution to hairpin stability than the Trp/Trp interaction. Trp/Tyr interactions can provide significant stabilization, much greater than the Trp/aliphatic interaction, but Tyr/Tyr interactions are not as significant. Cross-strand interacting residues involving Trp with an edge-to-face orientation with Trp or Tyr had the strongest impact on hairpin stability.

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Year:  2010        PMID: 20423111     DOI: 10.1021/bi100491s

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

Review 1.  Implications of aromatic-aromatic interactions: From protein structures to peptide models.

Authors:  Kamlesh Madhusudan Makwana; Radhakrishnan Mahalakshmi
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

2.  Aromatic cluster mutations produce focal modulations of β-sheet structure.

Authors:  Matthew Biancalana; Koki Makabe; Shude Yan; Shohei Koide
Journal:  Protein Sci       Date:  2015-03-25       Impact factor: 6.725

3.  Infrared study of the stability and folding kinetics of a series of β-hairpin peptides with a common NPDG turn.

Authors:  Yao Xu; Deguo Du; Rolando Oyola
Journal:  J Phys Chem B       Date:  2011-12-02       Impact factor: 2.991

4.  An improved capping unit for stabilizing the ends of associated β-strands.

Authors:  Jordan M Anderson; Brandon L Kier; Alexander A Shcherbakov; Niels H Andersen
Journal:  FEBS Lett       Date:  2014-11-15       Impact factor: 4.124

5.  UV resonance Raman study of TrpZip2 and related peptides: π-π interactions of tryptophan.

Authors:  Diana E Schlamadinger; Brian S Leigh; Judy E Kim
Journal:  J Raman Spectrosc       Date:  2012-10       Impact factor: 3.133

6.  Aryl-aryl interactions in designed peptide folds: Spectroscopic characteristics and optimal placement for structure stabilization.

Authors:  Jordan M Anderson; Brandon L Kier; Brice Jurban; Aimee Byrne; Irene Shu; Lisa A Eidenschink; Alexander A Shcherbakov; Mike Hudson; R M Fesinmeyer; Niels H Andersen
Journal:  Biopolymers       Date:  2016-06       Impact factor: 2.505

7.  Double tryptophan exciton probe to gauge proximal side chains in proteins: augmentation at low temperature.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  J Phys Chem B       Date:  2015-03-02       Impact factor: 2.991

8.  Tryptophan 415 Is Critical for the Cholesterol Transport Functions of Scavenger Receptor BI.

Authors:  Rebecca L Holme; James J Miller; Kay Nicholson; Daisy Sahoo
Journal:  Biochemistry       Date:  2015-12-23       Impact factor: 3.162

9.  Hydrogen Bond Surrogate Stabilization of β-Hairpins.

Authors:  Nicholas Sawyer; Paramjit S Arora
Journal:  ACS Chem Biol       Date:  2018-07-18       Impact factor: 5.100

10.  Exciton circular dichroism couplet arising from nitrile-derivatized aromatic residues as a structural probe of proteins.

Authors:  Debopreeti Mukherjee; Feng Gai
Journal:  Anal Biochem       Date:  2016-05-29       Impact factor: 3.365

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