Literature DB >> 20414480

GOSA, a simulated annealing-based program for global optimization of nonlinear problems, also reveals transyears.

Jerzy Czaplicki1, Germaine Cornélissen, Franz Halberg.   

Abstract

Transyears in biology have been documented thus far by the extended cosinor approach, including linear-nonlinear rhythmometry. We here confirm the existence of transyears by simulated annealing, a method originally developed for a much broader use, but described and introduced herein for validating its application to time series. The method is illustrated both on an artificial test case with known components and on biological data. We provide a table comparing results by the two methods and trust that the procedure will serve the budding sciences of chronobiology (the study of mechanisms underlying biological time structure), chronomics (the mapping of time structures in and around us), and chronobioethics, using the foregoing disciplines to add to concern for illnesses of individuals, and to budding focus on diseases of nations and civilizations.

Year:  2006        PMID: 20414480      PMCID: PMC2857782     

Source DB:  PubMed          Journal:  J Appl Biomed        ISSN: 1214-021X            Impact factor:   1.797


  1 in total

1.  Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms. Circumventing problems associated with folding.

Authors:  M Nilges; G M Clore; A M Gronenborn
Journal:  FEBS Lett       Date:  1988-10-24       Impact factor: 4.124

  1 in total
  6 in total

1.  Order parameters of a transmembrane helix in a fluid bilayer: case study of a WALP peptide.

Authors:  Andrea Holt; Léa Rougier; Valérie Réat; Franck Jolibois; Olivier Saurel; Jerzy Czaplicki; J Antoinette Killian; Alain Milon
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Procedures for numerical analysis of circadian rhythms.

Authors:  Roberto Refinetti; Germaine Corné Lissen; Franz Halberg
Journal:  Biol Rhythm Res       Date:  2007       Impact factor: 1.219

3.  Structural determinants of specific DNA-recognition by the THAP zinc finger.

Authors:  Sébastien Campagne; Olivier Saurel; Virginie Gervais; Alain Milon
Journal:  Nucleic Acids Res       Date:  2010-02-09       Impact factor: 16.971

4.  Molecular evolution of multiple arylalkylamine N-acetyltransferase (AANAT) in fish.

Authors:  Bina Zilberman-Peled; Sharron Bransburg-Zabary; David C Klein; Yoav Gothilf
Journal:  Mar Drugs       Date:  2011-05-24       Impact factor: 6.085

5.  Towards the classification of DYT6 dystonia mutants in the DNA-binding domain of THAP1.

Authors:  Sébastien Campagne; Isabelle Muller; Alain Milon; Virginie Gervais
Journal:  Nucleic Acids Res       Date:  2012-07-27       Impact factor: 16.971

Review 6.  Cosinor-based rhythmometry.

Authors:  Germaine Cornelissen
Journal:  Theor Biol Med Model       Date:  2014-04-11       Impact factor: 2.432

  6 in total

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