Literature DB >> 20404093

Mammalian DEAD box protein Ddx51 acts in 3' end maturation of 28S rRNA by promoting the release of U8 snoRNA.

Leena Srivastava1, Yevgeniya R Lapik, Minshi Wang, Dimitri G Pestov.   

Abstract

Biogenesis of eukaryotic ribosomes requires a number of RNA helicases that drive molecular rearrangements at various points of the assembly pathway. While many ribosome synthesis factors are conserved among all eukaryotes, certain features of ribosome maturation, such as U8 snoRNA-assisted processing of the 5.8S and 28S rRNA precursors, are observed only in metazoan cells. Here, we identify the mammalian DEAD box helicase family member Ddx51 as a novel ribosome synthesis factor and an interacting partner of the nucleolar GTP-binding protein Nog1. Unlike any previously studied yeast helicases, Ddx51 is required for the formation of the 3' end of 28S rRNA. Ddx51 binds to pre-60S subunit complexes and promotes displacement of U8 snoRNA from pre-rRNA, which is necessary for the removal of the 3' external transcribed spacer from 28S rRNA and productive downstream processing. These data demonstrate the emergence of a novel factor that facilitates a pre-rRNA processing event specific for higher eukaryotes.

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Year:  2010        PMID: 20404093      PMCID: PMC2876670          DOI: 10.1128/MCB.00226-10

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  60 in total

1.  Active disruption of an RNA-protein interaction by a DExH/D RNA helicase.

Authors:  E Jankowsky; C H Gross; S Shuman; A M Pyle
Journal:  Science       Date:  2001-01-05       Impact factor: 47.728

Review 2.  The function and synthesis of ribosomes.

Authors:  D L Lafontaine; D Tollervey
Journal:  Nat Rev Mol Cell Biol       Date:  2001-07       Impact factor: 94.444

Review 3.  DExD/H box RNA helicases: from generic motors to specific dissociation functions.

Authors:  N K Tanner; P Linder
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

Review 4.  Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions.

Authors:  Tamás Kiss
Journal:  Cell       Date:  2002-04-19       Impact factor: 41.582

5.  Physical and functional interaction between Pes1 and Bop1 in mammalian ribosome biogenesis.

Authors:  Yevgeniya R Lapik; Croydon J Fernandes; Lester F Lau; Dimitri G Pestov
Journal:  Mol Cell       Date:  2004-07-02       Impact factor: 17.970

6.  Bop1 is a mouse WD40 repeat nucleolar protein involved in 28S and 5. 8S RRNA processing and 60S ribosome biogenesis.

Authors:  Z Strezoska; D G Pestov; L F Lau
Journal:  Mol Cell Biol       Date:  2000-08       Impact factor: 4.272

Review 7.  Ribosome synthesis in Saccharomyces cerevisiae.

Authors:  J Venema; D Tollervey
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

Review 8.  Driving ribosome assembly.

Authors:  Dieter Kressler; Ed Hurt; Jochen Bassler
Journal:  Biochim Biophys Acta       Date:  2009-10-30

9.  Characterization of mouse 45S ribosomal RNA subspecies suggests that the first processing cleavage occurs 600 +/- 100 nucleotides from the 5' end and the second 500 +/- 100 nucleotides from the 3' end of a 13.9 kb precursor.

Authors:  T Gurney
Journal:  Nucleic Acids Res       Date:  1985-07-11       Impact factor: 16.971

10.  Ultrastructural and biochemical studies on the precursor ribosomal particles isolated from rat liver nucleoli.

Authors:  S Matsuura; T Morimoto; Y Tashiro; T Higashinakagawa; M Muramatsu
Journal:  J Cell Biol       Date:  1974-11       Impact factor: 10.539

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  34 in total

Review 1.  DExD/H-box RNA helicases in ribosome biogenesis.

Authors:  Roman Martin; Annika U Straub; Carmen Doebele; Markus T Bohnsack
Journal:  RNA Biol       Date:  2012-08-24       Impact factor: 4.652

2.  Cellular senescence and protein degradation: breaking down cancer.

Authors:  Xavier Deschênes-Simard; Frédéric Lessard; Marie-France Gaumont-Leclerc; Nabeel Bardeesy; Gerardo Ferbeyre
Journal:  Cell Cycle       Date:  2014-05-27       Impact factor: 4.534

3.  Cyclin-dependent kinase 9 links RNA polymerase II transcription to processing of ribosomal RNA.

Authors:  Kaspar Burger; Bastian Mühl; Michaela Rohrmoser; Britta Coordes; Martin Heidemann; Markus Kellner; Anita Gruber-Eber; Vigo Heissmeyer; Katja Strässer; Dirk Eick
Journal:  J Biol Chem       Date:  2013-06-06       Impact factor: 5.157

4.  Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism.

Authors:  Daniel D Scott; Christian Trahan; Pierre J Zindy; Lisbeth C Aguilar; Marc Y Delubac; Eric L Van Nostrand; Srivathsan Adivarahan; Karen E Wei; Gene W Yeo; Daniel Zenklusen; Marlene Oeffinger
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

5.  Splicing factor 2-associated protein p32 participates in ribosome biogenesis by regulating the binding of Nop52 and fibrillarin to preribosome particles.

Authors:  Harunori Yoshikawa; Wataru Komatsu; Toshiya Hayano; Yutaka Miura; Keiichi Homma; Keiichi Izumikawa; Hideaki Ishikawa; Naoki Miyazawa; Hiroyuki Tachikawa; Yoshio Yamauchi; Toshiaki Isobe; Nobuhiro Takahashi
Journal:  Mol Cell Proteomics       Date:  2011-05-02       Impact factor: 5.911

6.  Comprehensive characterization of the rRNA metabolism-related genes in human cancer.

Authors:  Kaisa Cui; Cheng Liu; Xu Li; Qiang Zhang; Youjun Li
Journal:  Oncogene       Date:  2019-09-23       Impact factor: 9.867

7.  A protein inventory of human ribosome biogenesis reveals an essential function of exportin 5 in 60S subunit export.

Authors:  Thomas Wild; Peter Horvath; Emanuel Wyler; Barbara Widmann; Lukas Badertscher; Ivo Zemp; Karol Kozak; Gabor Csucs; Elsebet Lund; Ulrike Kutay
Journal:  PLoS Biol       Date:  2010-10-26       Impact factor: 8.029

8.  DDX39B promotes translation through regulation of pre-ribosomal RNA levels.

Authors:  Sharad Awasthi; Baskar Chakrapani; Arun Mahesh; Pavithra L Chavali; Sreenivas Chavali; Arunkumar Dhayalan
Journal:  RNA Biol       Date:  2018-09-19       Impact factor: 4.652

9.  The Conserved RNA Exonuclease Rexo5 Is Required for 3' End Maturation of 28S rRNA, 5S rRNA, and snoRNAs.

Authors:  Stefanie Gerstberger; Cindy Meyer; Sigi Benjamin-Hong; Joe Rodriguez; Daniel Briskin; Claudia Bognanni; Kimberly Bogardus; Hermann Steller; Thomas Tuschl
Journal:  Cell Rep       Date:  2017-10-17       Impact factor: 9.423

10.  4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response.

Authors:  Kaspar Burger; Bastian Mühl; Markus Kellner; Michaela Rohrmoser; Anita Gruber-Eber; Lukas Windhager; Caroline C Friedel; Lars Dölken; Dirk Eick
Journal:  RNA Biol       Date:  2013-09-04       Impact factor: 4.652

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