Literature DB >> 22995828

Ski2-like RNA helicase structures: common themes and complex assemblies.

Sean J Johnson1, Ryan N Jackson.   

Abstract

Ski2-like RNA helicases are large multidomain proteins involved in a variety of RNA processing and degradation events. Recent structures of Mtr4, Ski2 and Brr2 provide our first view of these intricate helicases. Here we review these structures, which reveal a conserved ring-like architecture that extends beyond the canonical RecA domains to include a winged helix and ratchet domain. Comparison of apo- and RNA-bound Mtr4 structures suggests a role for the winged helix domain as a molecular hub that coordinates RNA interacting events throughout the helicase. Unique accessory domains provide expanded diversity and functionality to each Ski2-like family member. A common theme is the integration of Ski2-like RNA helicases into larger protein assemblies. We describe the central role of Mtr4 and Ski2 in formation of complexes that activate RNA decay by the eukaryotic exosome. The current structures provide clues into what promises to be a fascinating view of these dynamic assemblies.

Entities:  

Keywords:  Brr2; Mtr4; RNA helicase; RNA processing; Ski2; structure

Mesh:

Substances:

Year:  2012        PMID: 22995828      PMCID: PMC3590235          DOI: 10.4161/rna.22101

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  116 in total

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2.  Yeast nuclear RNA processing.

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Authors:  Moeko Miyashita; Hiroyuki Oshiumi; Misako Matsumoto; Tsukasa Seya
Journal:  Mol Cell Biol       Date:  2011-07-26       Impact factor: 4.272

5.  Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae.

Authors:  J de la Cruz; D Kressler; D Tollervey; P Linder
Journal:  EMBO J       Date:  1998-02-16       Impact factor: 11.598

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Journal:  Trends Biochem Sci       Date:  2011-01       Impact factor: 13.807

Review 7.  Brr2p RNA helicase with a split personality: insights into structure and function.

Authors:  Daniela Hahn; Jean D Beggs
Journal:  Biochem Soc Trans       Date:  2010-08       Impact factor: 5.407

8.  Chromosomal superkiller mutants of Saccharomyces cerevisiae.

Authors:  A Toh-E; P Guerry; R B Wickner
Journal:  J Bacteriol       Date:  1978-12       Impact factor: 3.490

9.  The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop.

Authors:  Jinhu Guo; Ping Cheng; Haiyan Yuan; Yi Liu
Journal:  Cell       Date:  2009-09-10       Impact factor: 41.582

10.  Structure of the DNA repair helicase hel308 reveals DNA binding and autoinhibitory domains.

Authors:  Jodi D Richards; Kenneth A Johnson; Huanting Liu; Anne-Marie McRobbie; Stephen McMahon; Muse Oke; Lester Carter; James H Naismith; Malcolm F White
Journal:  J Biol Chem       Date:  2007-12-04       Impact factor: 5.157

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  36 in total

1.  Mycobacterium smegmatis HelY Is an RNA-Activated ATPase/dATPase and 3'-to-5' Helicase That Unwinds 3'-Tailed RNA Duplexes and RNA:DNA Hybrids.

Authors:  Maria Loressa Uson; Heather Ordonez; Stewart Shuman
Journal:  J Bacteriol       Date:  2015-07-13       Impact factor: 3.490

Review 2.  RNA helicase proteins as chaperones and remodelers.

Authors:  Inga Jarmoskaite; Rick Russell
Journal:  Annu Rev Biochem       Date:  2014-03-12       Impact factor: 23.643

3.  Closing in on ATPase Activity by an RNA Helicase.

Authors:  Sean J Johnson; Matthew K Yim
Journal:  Structure       Date:  2020-02-04       Impact factor: 5.006

4.  Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock.

Authors:  Karen S Conrad; Jennifer M Hurley; Joanne Widom; Carol S Ringelberg; Jennifer J Loros; Jay C Dunlap; Brian R Crane
Journal:  EMBO J       Date:  2016-06-23       Impact factor: 11.598

Review 5.  The multiple functions of RNA helicases as drivers and regulators of gene expression.

Authors:  Cyril F Bourgeois; Franck Mortreux; Didier Auboeuf
Journal:  Nat Rev Mol Cell Biol       Date:  2016-06-02       Impact factor: 94.444

6.  RNA processing machineries in Archaea: the 5'-3' exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3'-5' exoribonucleolytic RNA exosome machinery.

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Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

7.  The Mtr4 ratchet helix and arch domain both function to promote RNA unwinding.

Authors:  Lacy L Taylor; Ryan N Jackson; Megi Rexhepaj; Alejandra Klauer King; Lindsey K Lott; Ambro van Hoof; Sean J Johnson
Journal:  Nucleic Acids Res       Date:  2014-11-20       Impact factor: 16.971

8.  Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.

Authors:  Junghyun Lim; Pankaj Kumar Giri; David Kazadi; Brice Laffleur; Wanwei Zhang; Veronika Grinstein; Evangelos Pefanis; Lewis M Brown; Erik Ladewig; Ophélie Martin; Yuling Chen; Raul Rabadan; François Boyer; Gerson Rothschild; Michel Cogné; Eric Pinaud; Haiteng Deng; Uttiya Basu
Journal:  Cell       Date:  2017-04-20       Impact factor: 41.582

9.  Retinitis Pigmentosa Mutations in Bad Response to Refrigeration 2 (Brr2) Impair ATPase and Helicase Activity.

Authors:  Sarah Ledoux; Christine Guthrie
Journal:  J Biol Chem       Date:  2016-04-12       Impact factor: 5.157

Review 10.  RNA helicases are hubs that orchestrate exosome-dependent 3'-5' decay.

Authors:  Eva-Maria Weick; Christopher D Lima
Journal:  Curr Opin Struct Biol       Date:  2020-11-02       Impact factor: 6.809

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