Literature DB >> 20403320

How the sequence of a gene can tune its translation.

Kurt Fredrick1, Michael Ibba.   

Abstract

Sixty-one codons specify 20 amino acids, offering cells many options for encoding a polypeptide sequence. Two new studies (Cannarrozzi et al., 2010; Tuller et al., 2010) now foster the idea that patterns of codon usage can control ribosome speed, fine-tuning translation to increase the efficiency of protein synthesis. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID： 20403320      PMCID： PMC2866089          DOI： 10.1016/j.cell.2010.03.033

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


  18 in total

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Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  Unfolding of mRNA secondary structure by the bacterial translation initiation complex.

Authors:  Sean M Studer; Simpson Joseph
Journal:  Mol Cell       Date:  2006-04-07       Impact factor: 17.970

3.  Evolutionary flux of potentially bldA-dependent Streptomyces genes containing the rare leucine codon TTA.

Authors:  Govind Chandra; Keith F Chater
Journal:  Antonie Van Leeuwenhoek       Date:  2008-03-05       Impact factor: 2.271

4.  An important role for the multienzyme aminoacyl-tRNA synthetase complex in mammalian translation and cell growth.

Authors:  Sophia V Kyriacou; Murray P Deutscher
Journal:  Mol Cell       Date:  2008-02-29       Impact factor: 17.970

5.  Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.

Authors:  Gong Zhang; Magdalena Hubalewska; Zoya Ignatova
Journal:  Nat Struct Mol Biol       Date:  2009-02-08       Impact factor: 15.369

6.  Genome-wide analysis of tRNA charging and activation of the eIF2 kinase Gcn2p.

Authors:  John M Zaborske; Jana Narasimhan; Li Jiang; Sheree A Wek; Kimberly A Dittmar; Florien Freimoser; Tao Pan; Ronald C Wek
Journal:  J Biol Chem       Date:  2009-06-22       Impact factor: 5.157

7.  Dynamic Organization of Aminoacyl-tRNA Synthetase Complexes in the Cytoplasm of Human Cells.

Authors:  Monika Kaminska; Svitlana Havrylenko; Paulette Decottignies; Pierre Le Maréchal; Boris Negrutskii; Marc Mirande
Journal:  J Biol Chem       Date:  2009-03-16       Impact factor: 5.157

8.  Coding-sequence determinants of gene expression in Escherichia coli.

Authors:  Grzegorz Kudla; Andrew W Murray; David Tollervey; Joshua B Plotkin
Journal:  Science       Date:  2009-04-10       Impact factor: 47.728

9.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

10.  Hypusine-containing protein eIF5A promotes translation elongation.

Authors:  Preeti Saini; Daniel E Eyler; Rachel Green; Thomas E Dever
Journal:  Nature       Date:  2009-05-07       Impact factor: 49.962
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  76 in total

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Authors:  Tianwen Wang; Xingyuan Ma; Guocheng Du; Jian Chen
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

2.  Impact of the N-terminal secretor domain on YopD translocator function in Yersinia pseudotuberculosis type III secretion.

Authors:  Ayad A A Amer; Monika K Åhlund; Jeanette E Bröms; Åke Forsberg; Matthew S Francis
Journal:  J Bacteriol       Date:  2011-09-30       Impact factor: 3.490

Review 3.  Cellular mechanisms that control mistranslation.

Authors:  Noah M Reynolds; Beth A Lazazzera; Michael Ibba
Journal:  Nat Rev Microbiol       Date:  2010-12       Impact factor: 60.633

4.  argC Orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti.

Authors:  Rafael Díaz; Carmen Vargas-Lagunas; Miguel Angel Villalobos; Humberto Peralta; Yolanda Mora; Sergio Encarnación; Lourdes Girard; Jaime Mora
Journal:  J Bacteriol       Date:  2010-11-12       Impact factor: 3.490

Review 5.  Manipulating the genetic code for membrane protein production: what have we learnt so far?

Authors:  Morten H H Nørholm; Sara Light; Minttu T I Virkki; Arne Elofsson; Gunnar von Heijne; Daniel O Daley
Journal:  Biochim Biophys Acta       Date:  2011-08-22

Review 6.  Emerging roles of tRNA in adaptive translation, signalling dynamics and disease.

Authors:  Sebastian Kirchner; Zoya Ignatova
Journal:  Nat Rev Genet       Date:  2014-12-23       Impact factor: 53.242

7.  Translation attenuation via 3' terminal codon usage in bovine csn1s2 is responsible for the difference in αs2- and β-casein profile in milk.

Authors:  Julie J Kim; Jaeju Yu; Jnanankur Bag; Marica Bakovic; John P Cant
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

8.  Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium.

Authors:  Ayan Roy; Subhasish Mukhopadhyay; Indrani Sarkar; Arnab Sen
Journal:  World J Microbiol Biotechnol       Date:  2015-04-05       Impact factor: 3.312

9.  Optimizing assembly and production of native bispecific antibodies by codon de-optimization.

Authors:  Giovanni Magistrelli; Yves Poitevin; Florence Schlosser; Guillemette Pontini; Pauline Malinge; Soheila Josserand; Marie Corbier; Nicolas Fischer
Journal:  MAbs       Date:  2017 Feb/Mar       Impact factor: 5.857

10.  ExtRamp: a novel algorithm for extracting the ramp sequence based on the tRNA adaptation index or relative codon adaptiveness.

Authors:  Justin B Miller; Logan R Brase; Perry G Ridge
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971
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