Literature DB >> 20399183

Pi release from myosin: a simulation analysis of possible pathways.

Marco Cecchini1, Yuri Alexeev, Martin Karplus.   

Abstract

The release of phosphate (Pi) is an important element in actomyosin function and has been shown to be accelerated by the binding of myosin to actin. To provide information about the structural elements important for Pi release, possible escape pathways from various isolated myosin II structures have been determined by molecular dynamics simulations designed for studying such slow processes. The residues forming the pathways were identified and their role was evaluated by mutant simulations. Pi release is slow in the pre-powerstroke structure, an important element in preventing the powerstroke prior to actin binding, and is much more rapid for Pi modeled into the post-rigor and rigor-like structures. The previously proposed backdoor route is dominant in the pre-powerstroke and post-rigor states, whereas a different path is most important in the rigor-like state. This finding suggests a mechanism for the actin-activated acceleration of Pi release. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20399183      PMCID: PMC2858069          DOI: 10.1016/j.str.2010.01.014

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  39 in total

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2.  A structural state of the myosin V motor without bound nucleotide.

Authors:  Pierre-Damien Coureux; Amber L Wells; Julie Ménétrey; Christopher M Yengo; Carl A Morris; H Lee Sweeney; Anne Houdusse
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4.  A model of myosin V processivity.

Authors:  Steven S Rosenfeld; H Lee Sweeney
Journal:  J Biol Chem       Date:  2004-07-14       Impact factor: 5.157

Review 5.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

6.  Active site comparisons highlight structural similarities between myosin and other P-loop proteins.

Authors:  C A Smith; I Rayment
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

7.  The kinetic mechanism of myosin V.

Authors:  E M De La Cruz; A L Wells; S S Rosenfeld; E M Ostap; H L Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

8.  Structural mechanism of the recovery stroke in the myosin molecular motor.

Authors:  Stefan Fischer; Björn Windshügel; Daniel Horak; Kenneth C Holmes; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-29       Impact factor: 11.205

9.  X-ray structures of the myosin motor domain of Dictyostelium discoideum complexed with MgADP.BeFx and MgADP.AlF4-.

Authors:  A J Fisher; C A Smith; J B Thoden; R Smith; K Sutoh; H M Holden; I Rayment
Journal:  Biochemistry       Date:  1995-07-18       Impact factor: 3.162

10.  Three-dimensional structure of myosin subfragment-1: a molecular motor.

Authors:  I Rayment; W R Rypniewski; K Schmidt-Bäse; R Smith; D R Tomchick; M M Benning; D A Winkelmann; G Wesenberg; H M Holden
Journal:  Science       Date:  1993-07-02       Impact factor: 47.728

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  22 in total

1.  Effects of ATP and actin-filament binding on the dynamics of the myosin II S1 domain.

Authors:  Joseph L Baker; Gregory A Voth
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

2.  How actin initiates the motor activity of Myosin.

Authors:  Paola Llinas; Tatiana Isabet; Lin Song; Virginie Ropars; Bin Zong; Hannah Benisty; Serena Sirigu; Carl Morris; Carlos Kikuti; Dan Safer; H Lee Sweeney; Anne Houdusse
Journal:  Dev Cell       Date:  2015-04-30       Impact factor: 12.270

3.  Extension of a three-helix bundle domain of myosin VI and key role of calmodulins.

Authors:  Yanxin Liu; Jen Hsin; HyeongJun Kim; Paul R Selvin; Klaus Schulten
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

4.  A new mechanokinetic model for muscle contraction, where force and movement are triggered by phosphate release.

Authors:  David A Smith
Journal:  J Muscle Res Cell Motil       Date:  2014-10-16       Impact factor: 2.698

5.  Molecular mechanisms underlying deoxy-ADP.Pi activation of pre-powerstroke myosin.

Authors:  Sarah G Nowakowski; Michael Regnier; Valerie Daggett
Journal:  Protein Sci       Date:  2017-03-21       Impact factor: 6.725

Review 6.  Overview of the mechanism of cytoskeletal motors based on structure.

Authors:  Yusuke Kato; Takuya Miyakawa; Masaru Tanokura
Journal:  Biophys Rev       Date:  2017-12-12

7.  Trapping the ATP binding state leads to a detailed understanding of the F1-ATPase mechanism.

Authors:  Kwangho Nam; Jingzhi Pu; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

8.  Interactions between relay helix and Src homology 1 (SH1) domain helix drive the converter domain rotation during the recovery stroke of myosin II.

Authors:  Andrij Baumketner
Journal:  Proteins       Date:  2012-03-13

9.  Phosphate release coupled to rotary motion of F1-ATPase.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

10.  Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins.

Authors:  Wonmuk Hwang; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

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