Literature DB >> 8785318

Active site comparisons highlight structural similarities between myosin and other P-loop proteins.

C A Smith1, I Rayment.   

Abstract

The phosphate binding loop (P-loop) is a common feature of a large number of enzymes that bind nucleotide whose consensus sequence is often used as a fingerprint for identifying new members of this group. We review here the binding sites of nine purine nucleotide binding proteins, with a focus on their relationship to the active site of myosin. This demonstrates that there is considerable conversation in the distribution and nature of the ligands that coordinate the triphosphate moiety. This comparison further suggests that at least myosin and the G-proteins utilize a similar mechanism for nucleotide hydrolysis.

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Year:  1996        PMID: 8785318      PMCID: PMC1225128          DOI: 10.1016/S0006-3495(96)79745-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  51 in total

1.  The limited tryptic cleavage of chymotryptic S-1: an approach to the characterization of the actin site in myosin heads.

Authors:  D Mornet; P Pantel; E Audemard; R Kassab
Journal:  Biochem Biophys Res Commun       Date:  1979-08-13       Impact factor: 3.575

2.  The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP.

Authors:  M B Berry; B Meador; T Bilderback; P Liang; M Glaser; G N Phillips
Journal:  Proteins       Date:  1994-07

3.  The mechanism of guanosine nucleotide hydrolysis by p21 c-Ha-ras. The stereochemical course of the GTPase reaction.

Authors:  J Feuerstein; R S Goody; M R Webb
Journal:  J Biol Chem       Date:  1989-04-15       Impact factor: 5.157

4.  ATP-binding site of adenylate kinase: mechanistic implications of its homology with ras-encoded p21, F1-ATPase, and other nucleotide-binding proteins.

Authors:  D C Fry; S A Kuby; A S Mildvan
Journal:  Proc Natl Acad Sci U S A       Date:  1986-02       Impact factor: 11.205

5.  Probing the structure and mechanism of Ras protein with an expanded genetic code.

Authors:  H H Chung; D R Benson; P G Schultz
Journal:  Science       Date:  1993-02-05       Impact factor: 47.728

6.  Analysis of positional isotope exchange in ATP by cleavage of the beta P-O gamma P bond. Demonstration of negligible positional isotope exchange by myosin.

Authors:  M P Dale; D D Hackney
Journal:  Biochemistry       Date:  1987-12-15       Impact factor: 3.162

7.  Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis.

Authors:  D E Coleman; A M Berghuis; E Lee; M E Linder; A G Gilman; S R Sprang
Journal:  Science       Date:  1994-09-02       Impact factor: 47.728

8.  Transient phase of adenosine triphosphate hydrolysis by myosin, heavy meromyosin, and subfragment 1.

Authors:  E W Taylor
Journal:  Biochemistry       Date:  1977-02-22       Impact factor: 3.162

9.  Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.

Authors:  A AEvarsson; E Brazhnikov; M Garber; J Zheltonosova; Y Chirgadze; S al-Karadaghi; L A Svensson; A Liljas
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

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  62 in total

1.  Predicting conformational switches in proteins.

Authors:  M Young; K Kirshenbaum; K A Dill; S Highsmith
Journal:  Protein Sci       Date:  1999-09       Impact factor: 6.725

2.  Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase.

Authors:  E R Johnson; D B McKay
Journal:  RNA       Date:  1999-12       Impact factor: 4.942

Review 3.  The structural basis of muscle contraction.

Authors:  K C Holmes; M A Geeves
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2000-04-29       Impact factor: 6.237

4.  Molecular dynamics study of the energetic, mechanistic, and structural implications of a closed phosphate tube in ncd.

Authors:  T J Minehardt; R Cooke; E Pate; P A Kollman
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

5.  Functional diversity between orthologous myosins with minimal sequence diversity.

Authors:  M Canepari; R Rossi; M A Pellegrino; R Bottinelli; S Schiaffino; C Reggiani
Journal:  J Muscle Res Cell Motil       Date:  2000-05       Impact factor: 2.698

6.  Alteration of the adenine nucleotide response and increased Rubisco activation activity of Arabidopsis rubisco activase by site-directed mutagenesis.

Authors:  R P Kallis; R G Ewy; A R Portis
Journal:  Plant Physiol       Date:  2000-07       Impact factor: 8.340

7.  X-ray structure of HPr kinase: a bacterial protein kinase with a P-loop nucleotide-binding domain.

Authors:  S Fieulaine; S Morera; S Poncet; V Monedero; V Gueguen-Chaignon; A Galinier; J Janin; J Deutscher; S Nessler
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

8.  Biochemical and X-ray crystallographic studies on shikimate kinase: the important structural role of the P-loop lysine.

Authors:  T Krell; J Maclean; D J Boam; A Cooper; M Resmini; K Brocklehurst; S M Kelly; N C Price; A J Lapthorn; J R Coggins
Journal:  Protein Sci       Date:  2001-06       Impact factor: 6.725

9.  The crystal structures of chloramphenicol phosphotransferase reveal a novel inactivation mechanism.

Authors:  T Izard; J Ellis
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

10.  Mechanism of ABC transporters: a molecular dynamics simulation of a well characterized nucleotide-binding subunit.

Authors:  Peter M Jones; Anthony M George
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-17       Impact factor: 11.205

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