Literature DB >> 20397725

Transition state analogue structures of human phosphoglycerate kinase establish the importance of charge balance in catalysis.

Matthew J Cliff1, Matthew W Bowler, Andrea Varga, James P Marston, Judit Szabó, Andrea M Hounslow, Nicola J Baxter, G Michael Blackburn, Mária Vas, Jonathan P Waltho.   

Abstract

Transition state analogue (TSA) complexes formed by phosphoglycerate kinase (PGK) have been used to test the hypothesis that balancing of charge within the transition state dominates enzyme-catalyzed phosphoryl transfer. High-resolution structures of trifluoromagnesate (MgF(3)(-)) and tetrafluoroaluminate (AlF(4)(-)) complexes of PGK have been determined using X-ray crystallography and (19)F-based NMR methods, revealing the nature of the catalytically relevant state of this archetypal metabolic kinase. Importantly, the side chain of K219, which coordinates the alpha-phosphate group in previous ground state structures, is sequestered into coordinating the metal fluoride, thereby creating a charge environment complementary to the transferring phosphoryl group. In line with the dominance of charge balance in transition state organization, the substitution K219A induces a corresponding reduction in charge in the bound aluminum fluoride species, which changes to a trifluoroaluminate (AlF(3)(0)) complex. The AlF(3)(0) moiety retains the octahedral geometry observed within AlF(4)(-) TSA complexes, which endorses the proposal that some of the widely reported trigonal AlF(3)(0) complexes of phosphoryl transfer enzymes may have been misassigned and in reality contain MgF(3)(-).

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Year:  2010        PMID: 20397725     DOI: 10.1021/ja100974t

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  30 in total

1.  Expression, purification, crystallization and preliminary X-ray diffraction studies of phosphoglycerate kinase from methicillin-resistant Staphylococcus aureus MRSA252.

Authors:  Amlan Roychowdhury; Somnath Mukherjee; Amit Kumar Das
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-25

2.  Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.

Authors:  Heping Zheng; Ekaterina V Filippova; Karolina L Tkaczuk; Piotr Dworzynski; Maksymilian Chruszcz; Przemyslaw J Porebski; Zdzislaw Wawrzak; Olena Onopriyenko; Marina Kudritska; Sarah Grimshaw; Alexei Savchenko; Wayne F Anderson; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2012-03-10

3.  A spring-loaded release mechanism regulates domain movement and catalysis in phosphoglycerate kinase.

Authors:  Louiza Zerrad; Angelo Merli; Gunnar F Schröder; Andrea Varga; Éva Gráczer; Petra Pernot; Adam Round; Mária Vas; Matthew W Bowler
Journal:  J Biol Chem       Date:  2011-02-24       Impact factor: 5.157

4.  Measurement of the intrinsic variability within protein crystals: implications for sample-evaluation and data-collection strategies.

Authors:  Michael G Bowler; Matthew W Bowler
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

5.  Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea.

Authors:  Maura Rojas-Pirela; Diego Andrade-Alviárez; Verónica Rojas; Ulrike Kemmerling; Ana J Cáceres; Paul A Michels; Juan Luis Concepción; Wilfredo Quiñones
Journal:  Open Biol       Date:  2020-11-25       Impact factor: 6.411

6.  Near attack conformers dominate β-phosphoglucomutase complexes where geometry and charge distribution reflect those of substrate.

Authors:  Joanna L Griffin; Matthew W Bowler; Nicola J Baxter; Katherine N Leigh; Hugh R W Dannatt; Andrea M Hounslow; G Michael Blackburn; Charles Edwin Webster; Matthew J Cliff; Jonathan P Waltho
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-13       Impact factor: 11.205

7.  α-Fluorophosphonates reveal how a phosphomutase conserves transition state conformation over hexose recognition in its two-step reaction.

Authors:  Yi Jin; Debabrata Bhattasali; Erika Pellegrini; Stephanie M Forget; Nicola J Baxter; Matthew J Cliff; Matthew W Bowler; David L Jakeman; G Michael Blackburn; Jonathan P Waltho
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-07       Impact factor: 11.205

8.  Thioredoxin-dependent redox regulation of chloroplastic phosphoglycerate kinase from Chlamydomonas reinhardtii.

Authors:  Samuel Morisse; Laure Michelet; Mariette Bedhomme; Christophe H Marchand; Matteo Calvaresi; Paolo Trost; Simona Fermani; Mirko Zaffagnini; Stéphane D Lemaire
Journal:  J Biol Chem       Date:  2014-09-08       Impact factor: 5.157

9.  Insights into human phosphoglycerate kinase 1 deficiency as a conformational disease from biochemical, biophysical, and in vitro expression analyses.

Authors:  Angel L Pey; Maristella Maggi; Giovanna Valentini
Journal:  J Inherit Metab Dis       Date:  2014-05-17       Impact factor: 4.982

10.  Molecular insights on pathogenic effects of mutations causing phosphoglycerate kinase deficiency.

Authors:  Laurent R Chiarelli; Simone M Morera; Paola Bianchi; Elisa Fermo; Alberto Zanella; Alessandro Galizzi; Giovanna Valentini
Journal:  PLoS One       Date:  2012-02-14       Impact factor: 3.240

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