Literature DB >> 21636907

Expression, purification, crystallization and preliminary X-ray diffraction studies of phosphoglycerate kinase from methicillin-resistant Staphylococcus aureus MRSA252.

Amlan Roychowdhury1, Somnath Mukherjee, Amit Kumar Das.   

Abstract

Phosphoglycerate kinase (PGK) from methicillin-resistant Staphylococcus aureus MRSA252 has been cloned in pQE30 expression vector, overexpressed in Escherichia coli SG13009 (pREP4) cells and purified to homogeneity. The protein was crystallized from 0.15 M CaCl(2), 0.1 M HEPES-NaOH pH 6.8, 20%(w/v) polyethylene glycol 2000 at 298 K by the hanging-drop vapour-diffusion method. The crystals belonged to space group P2(1), with unit-cell parameters a = 45.14, b = 74.75, c = 58.67 Å, β = 95.72°. X-ray diffraction data have been collected and processed to a maximum resolution of 2.3 Å. The presence of one molecule in the asymmetric unit gives a Matthews coefficient (V(M)) of 2.26 Å(3) Da(-1) with a solvent content of 46%. The structure has been solved by molecular replacement and structure refinement is now in progress.

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Year:  2011        PMID: 21636907      PMCID: PMC3107138          DOI: 10.1107/S1744309111007391

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

1.  Substrate-induced double sided H-bond network as a means of domain closure in 3-phosphoglycerate kinase.

Authors:  Andrea Varga; Beáta Flachner; Peter Konarev; Eva Gráczer; Judit Szabó; Dmitri Svergun; Péter Závodszky; Mária Vas
Journal:  FEBS Lett       Date:  2006-04-21       Impact factor: 4.124

2.  Synergistic effects of substrate-induced conformational changes in phosphoglycerate kinase activation.

Authors:  B E Bernstein; P A Michels; W G Hol
Journal:  Nature       Date:  1997-01-16       Impact factor: 49.962

3.  Crystal structure of glyceraldehyde-3-phosphate dehydrogenase 1 from methicillin-resistant Staphylococcus aureus MRSA252 provides novel insights into substrate binding and catalytic mechanism.

Authors:  Somnath Mukherjee; Debajyoti Dutta; Baisakhee Saha; Amit Kumar Das
Journal:  J Mol Biol       Date:  2010-07-08       Impact factor: 5.469

Review 4.  Staphylococcus aureus: a well-armed pathogen.

Authors:  G L Archer
Journal:  Clin Infect Dis       Date:  1998-05       Impact factor: 9.079

5.  Sequence, structure and activity of phosphoglycerate kinase: a possible hinge-bending enzyme.

Authors:  R D Banks; C C Blake; P R Evans; R Haser; D W Rice; G W Hardy; M Merrett; A W Phillips
Journal:  Nature       Date:  1979-06-28       Impact factor: 49.962

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 7.  Phosphoglycerate kinase.

Authors:  C C Blake; D W Rice
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1981-06-26       Impact factor: 6.237

8.  Expression, purification, crystallization and preliminary X-ray diffraction studies of triosephosphate isomerase from methicillin-resistant Staphylococcus aureus (MRSA252).

Authors:  Somnath Mukherjee; Debajyoti Dutta; Baisakhee Saha; Amit Kumar Das
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-25

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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2.  Expression, purification, crystallization and preliminary X-ray diffraction studies of phosphoglycerate mutase from Staphylococcus aureus NCTC8325.

Authors:  Amlan Roychowdhury; Anirban Kundu; Akanksha Gujar; Madhuparna Bose; Amit Kumar Das
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

3.  Expression, purification, crystallization and preliminary crystallographic analysis of the phosphoglycerate kinase from Acinetobacter baumannii.

Authors:  Kayla Baretta; Craig Garen; Jiang Yin; Michael N G James
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-06-27

4.  Antibacterial apple cider vinegar eradicates methicillin resistant Staphylococcus aureus and resistant Escherichia coli.

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Journal:  Sci Rep       Date:  2021-01-20       Impact factor: 4.379

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