Literature DB >> 20396604

Enzymology takes a quantum leap forward.

Michael J Sutcliffe1, Nigel S Scrutton.   

Abstract

Enzymes are biological molecules that accelerate chemical reactions. They are central to the existence of life. Since the discovery of enzymes just over a century ago, we have witnessed an explosion in our understanding of enzyme catalysis, leading to a more detailed appreciation of how they work. A key breakthrough came from understanding how enzymes surmount the potential-energy barrier that separates reactants from products. The genetic engineering revolution has provided tools for dissecting enzyme structure and enabling design of novel function. Despite the huge efforts to redesign enzyme molecules for specific applications, progress in this area has been generally disappointing. This stems from our limited understanding of the subtleties by which enzymes enhance reaction rates. Based on current dogma, the vast majority of studies have concentrated on understanding how enzymes facilitate passage of the reaction over a static potential-energy barrier. However, recent studies have revealed that passage through, rather than over, the barrier can occur. These studies reveal that quantum mechanical phenomena, driven by protein dynamics, can play a pivotal role in enzyme action. The new millennium will witness a flurry of activity directed at understanding the role of quantum mechanics and protein motion in enzyme action. We discuss these new developments and how they will guide enzymology into the new millennium.

Entities:  

Year:  2000        PMID: 20396604      PMCID: PMC2854803          DOI: 10.1098/rsta.2000.0536

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  26 in total

Review 1.  From analysis to synthesis: new ligand binding sites on the lactate dehydrogenase framework. Part I.

Authors:  A R Clarke; T Atkinson; J J Holbrook
Journal:  Trends Biochem Sci       Date:  1989-03       Impact factor: 13.807

Review 2.  From analysis to synthesis: new ligand binding sites on the lactate dehydrogenase framework. Part II.

Authors:  A R Clarke; T Atkinson; J J Holbrook
Journal:  Trends Biochem Sci       Date:  1989-04       Impact factor: 13.807

3.  From force fields to dynamics: classical and quantal paths.

Authors:  D G Truhlar; M S Gordon
Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

Review 4.  How do enzymes work?

Authors:  J Kraut
Journal:  Science       Date:  1988-10-28       Impact factor: 47.728

5.  Protein and biological control.

Authors:  D E Koshland
Journal:  Sci Am       Date:  1973-10       Impact factor: 2.142

6.  Dynamics of protein conformational fluctuation in enzyme catalysis with special attention to proton transfers in serine proteinases.

Authors:  H Sumi; J Ulstrup
Journal:  Biochim Biophys Acta       Date:  1988-06-29

7.  Hydrogen tunneling in enzyme catalysis.

Authors:  B J Bahnson; J P Klinman
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

8.  Glucose-induced conformational change in yeast hexokinase.

Authors:  W S Bennett; T A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

9.  Studies of photosynthesis using a pulsed laser. I. Temperature dependence of cytochrome oxidation rate in chromatium. Evidence for tunneling.

Authors:  D DeVault; B Chance
Journal:  Biophys J       Date:  1966-11       Impact factor: 4.033

10.  Evidence that both protium and deuterium undergo significant tunneling in the reaction catalyzed by bovine serum amine oxidase.

Authors:  K L Grant; J P Klinman
Journal:  Biochemistry       Date:  1989-08-08       Impact factor: 3.162

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  6 in total

1.  Toward a quantum-mechanical description of metal-assisted phosphoryl transfer in pyrophosphatase.

Authors:  P Heikinheimo; V Tuominen; A K Ahonen; A Teplyakov; B S Cooperman; A A Baykov; R Lahti; A Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-06       Impact factor: 11.205

2.  Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis.

Authors:  E Joel Loveridge; Enas M Behiry; Jiannan Guo; Rudolf K Allemann
Journal:  Nat Chem       Date:  2012-03-11       Impact factor: 24.427

3.  An Analysis of All the Relevant Facts and Arguments Indicates that Enzyme Catalysis Does Not Involve Large Contributions from Nuclear Tunneling.

Authors:  Shina C L Kamerlin; Arieh Warshel
Journal:  J Phys Org Chem       Date:  2010-07       Impact factor: 2.391

Review 4.  Perspective: Defining and quantifying the role of dynamics in enzyme catalysis.

Authors:  Arieh Warshel; Ram Prasad Bora
Journal:  J Chem Phys       Date:  2016-05-14       Impact factor: 3.488

Review 5.  At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?

Authors:  Shina C L Kamerlin; Arieh Warshel
Journal:  Proteins       Date:  2010-05-01

6.  Quantum tunnelling in the context of SARS-CoV-2 infection.

Authors:  Betony Adams; Ilya Sinayskiy; Rienk van Grondelle; Francesco Petruccione
Journal:  Sci Rep       Date:  2022-10-08       Impact factor: 4.996

  6 in total

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