Literature DB >> 20388671

Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing.

Roosa A E Laitinen1, Korbinian Schneeberger, Noémie S Jelly, Stephan Ossowski, Detlef Weigel.   

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Year:  2010        PMID： 20388671      PMCID： PMC2879766          DOI： 10.1104/pp.110.156448

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  9 in total

1.  Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude.

Authors:  Huihua Fu; Zhenwei Zheng; Hugo K Dooner
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

2.  SHOREmap: simultaneous mapping and mutation identification by deep sequencing.

Authors:  Korbinian Schneeberger; Stephan Ossowski; Christa Lanz; Trine Juul; Annabeth Høgh Petersen; Kåre Lehmann Nielsen; Jan-Elo Jørgensen; Detlef Weigel; Stig Uggerhø Andersen
Journal:  Nat Methods       Date:  2009-08       Impact factor: 28.547

3.  Sequencing of natural strains of Arabidopsis thaliana with short reads.

Authors:  Stephan Ossowski; Korbinian Schneeberger; Richard M Clark; Christa Lanz; Norman Warthmann; Detlef Weigel
Journal:  Genome Res       Date:  2008-09-25       Impact factor: 9.043

4.  Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy.

Authors:  James R Lupski; Jeffrey G Reid; Claudia Gonzaga-Jauregui; David Rio Deiros; David C Y Chen; Lynne Nazareth; Matthew Bainbridge; Huyen Dinh; Chyn Jing; David A Wheeler; Amy L McGuire; Feng Zhang; Pawel Stankiewicz; John J Halperin; Chengyong Yang; Curtis Gehman; Danwei Guo; Rola K Irikat; Warren Tom; Nick J Fantin; Donna M Muzny; Richard A Gibbs
Journal:  N Engl J Med       Date:  2010-03-10       Impact factor: 91.245

5.  The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana.

Authors:  Stephan Ossowski; Korbinian Schneeberger; José Ignacio Lucas-Lledó; Norman Warthmann; Richard M Clark; Ruth G Shaw; Detlef Weigel; Michael Lynch
Journal:  Science       Date:  2010-01-01       Impact factor: 47.728

6.  Arabidopsis thaliana squalene epoxidase 1 is essential for root and seed development.

Authors:  Jeanne M Rasbery; Hui Shan; Renee J LeClair; Michael Norman; Seiichi P T Matsuda; Bonnie Bartel
Journal:  J Biol Chem       Date:  2007-04-10       Impact factor: 5.157

7.  Identification of the Arabidopsis dry2/sqe1-5 mutant reveals a central role for sterols in drought tolerance and regulation of reactive oxygen species.

Authors:  David Posé; Itziar Castanedo; Omar Borsani; Benjamín Nieto; Abel Rosado; Ludivine Taconnat; Albert Ferrer; Liam Dolan; Victoriano Valpuesta; Miguel A Botella
Journal:  Plant J       Date:  2009-02-26       Impact factor: 6.417

8.  Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments.

Authors:  Rainer Breitling; Patrick Armengaud; Anna Amtmann; Pawel Herzyk
Journal:  FEBS Lett       Date:  2004-08-27       Impact factor: 4.124

9.  Simultaneous alignment of short reads against multiple genomes.

Authors:  Korbinian Schneeberger; Jörg Hagmann; Stephan Ossowski; Norman Warthmann; Sandra Gesing; Oliver Kohlbacher; Detlef Weigel
Journal:  Genome Biol       Date:  2009-09-17       Impact factor: 13.583
  9 in total
  23 in total

Review 1.  Natural variation in Arabidopsis: from molecular genetics to ecological genomics.

Authors:  Detlef Weigel
Journal:  Plant Physiol       Date:  2011-12-06       Impact factor: 8.340

Review 2.  Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana.

Authors:  Joy Bergelson; Fabrice Roux
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

3.  Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana.

Authors:  Sunghyun Hong; Hae-Ryong Song; Kerry Lutz; Randall A Kerstetter; Todd P Michael; C Robertson McClung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-19       Impact factor: 11.205

Review 4.  Applications and challenges of next-generation sequencing in Brassica species.

Authors:  Lijuan Wei; Meili Xiao; Alice Hayward; Donghui Fu
Journal:  Planta       Date:  2013-09-24       Impact factor: 4.116

5.  Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers.

Authors:  Karl J V Nordström; Maria C Albani; Geo Velikkakam James; Caroline Gutjahr; Benjamin Hartwig; Franziska Turck; Uta Paszkowski; George Coupland; Korbinian Schneeberger
Journal:  Nat Biotechnol       Date:  2013-03-10       Impact factor: 54.908

6.  Next-generation mapping of complex traits with phenotype-based selection and introgression.

Authors:  Eric J Earley; Corbin D Jones
Journal:  Genetics       Date:  2011-09-21       Impact factor: 4.562

7.  Rapid identification of angulata leaf mutations using next-generation sequencing.

Authors:  Eduardo Mateo-Bonmatí; Rubén Casanova-Sáez; Héctor Candela; José Luis Micol
Journal:  Planta       Date:  2014-08-08       Impact factor: 4.116

8.  A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants.

Authors:  Joy Bergelson; Edward S Buckler; Joseph R Ecker; Magnus Nordborg; Detlef Weigel
Journal:  Plant Cell       Date:  2016-03-08       Impact factor: 11.277

9.  Reference-guided assembly of four diverse Arabidopsis thaliana genomes.

Authors:  Korbinian Schneeberger; Stephan Ossowski; Felix Ott; Juliane D Klein; Xi Wang; Christa Lanz; Lisa M Smith; Jun Cao; Joffrey Fitz; Norman Warthmann; Stefan R Henz; Daniel H Huson; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

10.  Using Aspergillus nidulans to identify antifungal drug resistance mutations.

Authors:  Xiaoxiao He; Shengnan Li; Susan G W Kaminskyj
Journal:  Eukaryot Cell       Date:  2013-12-20
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