Literature DB >> 19644454

SHOREmap: simultaneous mapping and mutation identification by deep sequencing.

Korbinian Schneeberger, Stephan Ossowski, Christa Lanz, Trine Juul, Annabeth Høgh Petersen, Kåre Lehmann Nielsen, Jan-Elo Jørgensen, Detlef Weigel, Stig Uggerhø Andersen.   

Abstract

Mesh：

Year:  2009        PMID： 19644454     DOI： 10.1038/nmeth0809-550

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  3 in total

1.  Sequencing of natural strains of Arabidopsis thaliana with short reads.

Authors:  Stephan Ossowski; Korbinian Schneeberger; Richard M Clark; Christa Lanz; Norman Warthmann; Detlef Weigel
Journal:  Genome Res       Date:  2008-09-25       Impact factor: 9.043

2.  Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.

Authors:  Richard M Clark; Gabriele Schweikert; Christopher Toomajian; Stephan Ossowski; Georg Zeller; Paul Shinn; Norman Warthmann; Tina T Hu; Glenn Fu; David A Hinds; Huaming Chen; Kelly A Frazer; Daniel H Huson; Bernhard Schölkopf; Magnus Nordborg; Gunnar Rätsch; Joseph R Ecker; Detlef Weigel
Journal:  Science       Date:  2007-07-20       Impact factor: 47.728

Review 3.  Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond.

Authors:  Ryan Lister; Brian D Gregory; Joseph R Ecker
Journal:  Curr Opin Plant Biol       Date:  2009-01-20       Impact factor: 7.834
  3 in total
  264 in total

1.  Discovery of mutations in Saccharomyces cerevisiae by pooled linkage analysis and whole-genome sequencing.

Authors:  Shanda R Birkeland; Natsuko Jin; Alev Cagla Ozdemir; Robert H Lyons; Lois S Weisman; Thomas E Wilson
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

2.  The recombination landscape in Arabidopsis thaliana F2 populations.

Authors:  P A Salomé; K Bomblies; J Fitz; R A E Laitinen; N Warthmann; L Yant; D Weigel
Journal:  Heredity (Edinb)       Date:  2011-11-09       Impact factor: 3.821

3.  Efficient mapping and cloning of mutations in zebrafish by low-coverage whole-genome sequencing.

Authors:  Margot E Bowen; Katrin Henke; Kellee R Siegfried; Matthew L Warman; Matthew P Harris
Journal:  Genetics       Date:  2011-12-14       Impact factor: 4.562

4.  Genome sequencing reveals agronomically important loci in rice using MutMap.

Authors:  Akira Abe; Shunichi Kosugi; Kentaro Yoshida; Satoshi Natsume; Hiroki Takagi; Hiroyuki Kanzaki; Hideo Matsumura; Kakoto Yoshida; Chikako Mitsuoka; Muluneh Tamiru; Hideki Innan; Liliana Cano; Sophien Kamoun; Ryohei Terauchi
Journal:  Nat Biotechnol       Date:  2012-01-22       Impact factor: 54.908

5.  New technologies for 21st century plant science.

Authors:  David W Ehrhardt; Wolf B Frommer
Journal:  Plant Cell       Date:  2012-02-24       Impact factor: 11.277

6.  High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H.

Authors:  Fahimeh Shahinnia; Arnis Druka; Jerome Franckowiak; Michele Morgante; Robbie Waugh; Nils Stein
Journal:  Theor Appl Genet       Date:  2011-09-30       Impact factor: 5.699

7.  SNP-Ratio Mapping (SRM): identifying lethal alleles and mutations in complex genetic backgrounds by next-generation sequencing.

Authors:  Heike Lindner; Michael T Raissig; Christian Sailer; Hiroko Shimosato-Asano; Rémy Bruggmann; Ueli Grossniklaus
Journal:  Genetics       Date:  2012-05-29       Impact factor: 4.562

8.  Gene discovery using mutagen-induced polymorphisms and deep sequencing: application to plant disease resistance.

Authors:  Ying Zhu; Hyung-gon Mang; Qi Sun; Jun Qian; Ashley Hipps; Jian Hua
Journal:  Genetics       Date:  2012-06-19       Impact factor: 4.562

Review 9.  The role of replicates for error mitigation in next-generation sequencing.

Authors:  Kimberly Robasky; Nathan E Lewis; George M Church
Journal:  Nat Rev Genet       Date:  2013-12-10       Impact factor: 53.242

10.  Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.

Authors:  Thomas Hackenberg; Trine Juul; Aija Auzina; Sonia Gwizdz; Anna Malolepszy; Katrien Van Der Kelen; Svend Dam; Simon Bressendorff; Andrea Lorentzen; Peter Roepstorff; Kåre Lehmann Nielsen; Jan-Elo Jørgensen; Daniel Hofius; Frank Van Breusegem; Morten Petersen; Stig Uggerhøj Andersen
Journal:  Plant Cell       Date:  2013-11-27       Impact factor: 11.277
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