Literature DB >> 26956491

A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants.

Joy Bergelson1, Edward S Buckler2, Joseph R Ecker3, Magnus Nordborg4, Detlef Weigel5.   

Abstract

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Mesh：

Year:  2016        PMID： 26956491      PMCID： PMC4826003          DOI： 10.1105/tpc.15.00502

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


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  34 in total

1.  Job Sharing in the Endomembrane System: Vacuolar Acidification Requires the Combined Activity of V-ATPase and V-PPase.

Authors:  Anne Kriegel; Zaida Andrés; Anna Medzihradszky; Falco Krüger; Stefan Scholl; Simon Delang; M Görkem Patir-Nebioglu; Gezahegn Gute; Haibing Yang; Angus S Murphy; Wendy Ann Peer; Anne Pfeiffer; Melanie Krebs; Jan U Lohmann; Karin Schumacher
Journal:  Plant Cell       Date:  2015-11-20       Impact factor: 11.277

Review 2.  The costs of using unauthenticated, over-passaged cell lines: how much more data do we need?

Authors:  Peyton Hughes; Damian Marshall; Yvonne Reid; Helen Parkes; Cohava Gelber
Journal:  Biotechniques       Date:  2007-11       Impact factor: 1.993

3.  Cell Biology. Fixing problems with cell lines.

Authors:  Jon R Lorsch; Francis S Collins; Jennifer Lippincott-Schwartz
Journal:  Science       Date:  2014-12-19       Impact factor: 47.728

4.  Source verification of mis-identified Arabidopsis thaliana accessions.

Authors:  Alison E Anastasio; Alexander Platt; Matthew Horton; Erich Grotewold; Randy Scholl; Justin O Borevitz; Magnus Nordborg; Joy Bergelson
Journal:  Plant J       Date:  2011-06-16       Impact factor: 6.417

5.  The GATA-type transcription factors GNC and GNL/CGA1 repress gibberellin signaling downstream from DELLA proteins and PHYTOCHROME-INTERACTING FACTORS.

Authors:  René Richter; Carina Behringer; Isabel Karin Müller; Claus Schwechheimer
Journal:  Genes Dev       Date:  2010-09-15       Impact factor: 11.361

6.  Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana.

Authors:  Kirsten Bomblies; Levi Yant; Roosa A Laitinen; Sang-Tae Kim; Jesse D Hollister; Norman Warthmann; Joffrey Fitz; Detlef Weigel
Journal:  PLoS Genet       Date:  2010-03-26       Impact factor: 5.917

7.  Chlamydomonas Genome Resource for Laboratory Strains Reveals a Mosaic of Sequence Variation, Identifies True Strain Histories, and Enables Strain-Specific Studies.

Authors:  Sean D Gallaher; Sorel T Fitz-Gibbon; Anne G Glaesener; Matteo Pellegrini; Sabeeha S Merchant
Journal:  Plant Cell       Date:  2015-08-25       Impact factor: 11.277

8.  A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species.

Authors:  Robert J Elshire; Jeffrey C Glaubitz; Qi Sun; Jesse A Poland; Ken Kawamoto; Edward S Buckler; Sharon E Mitchell
Journal:  PLoS One       Date:  2011-05-04       Impact factor: 3.240

9.  Retraction: Mechanosensitive channel candidate MCA2 is involved in touch-induced root responses in Arabidopsis.

Authors: 
Journal:  Front Plant Sci       Date:  2015-03-05       Impact factor: 5.753

10.  The Arabidopsis MAX pathway controls shoot branching by regulating auxin transport.

Authors:  Tom Bennett; Tobias Sieberer; Barbara Willett; Jon Booker; Christian Luschnig; Ottoline Leyser
Journal:  Curr Biol       Date:  2006-03-21       Impact factor: 10.834
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  14 in total

1.  Safeguarding Our Genetic Resources with Libraries of Doubled-Haploid Lines.

Authors:  Albrecht E Melchinger; Pascal Schopp; Dominik Müller; Tobias A Schrag; Eva Bauer; Sandra Unterseer; Linda Homann; Wolfgang Schipprack; Chris-Carolin Schön
Journal:  Genetics       Date:  2017-05-03       Impact factor: 4.562

2.  The Arabidopsis phyB-9 Mutant Has a Second-Site Mutation in the VENOSA4 Gene That Alters Chloroplast Size, Photosynthetic Traits, and Leaf Growth.

Authors:  Yuki Yoshida; Raquel Sarmiento-Mañús; Wataru Yamori; María Rosa Ponce; José Luis Micol; Hirokazu Tsukaya
Journal:  Plant Physiol       Date:  2018-09       Impact factor: 8.340

3.  Analysis of Arabidopsis Accessions Hypersensitive to a Loss of Chloroplast Translation.

Authors:  Nicole Parker; Yixing Wang; David Meinke
Journal:  Plant Physiol       Date:  2016-10-05       Impact factor: 8.340

4.  Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples.

Authors:  Rahul Pisupati; Ilka Reichardt; Ümit Seren; Pamela Korte; Viktoria Nizhynska; Envel Kerdaffrec; Kristina Uzunova; Fernando A Rabanal; Daniele L Filiault; Magnus Nordborg
Journal:  Sci Data       Date:  2017-12-19       Impact factor: 6.444

5.  Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria.

Authors:  Max J Feldman; Rachel E Paul; Darshi Banan; Jennifer F Barrett; Jose Sebastian; Muh-Ching Yee; Hui Jiang; Alexander E Lipka; Thomas P Brutnell; José R Dinneny; Andrew D B Leakey; Ivan Baxter
Journal:  PLoS Genet       Date:  2017-06-23       Impact factor: 5.917

6.  Mutations in the Arabidopsis AtMRS2-11/AtMGT10/VAR5 Gene Cause Leaf Reticulation.

Authors:  Shuang Liang; Yafei Qi; Jun Zhao; Yuanfeng Li; Rui Wang; Jingxia Shao; Xiayan Liu; Lijun An; Fei Yu
Journal:  Front Plant Sci       Date:  2017-11-27       Impact factor: 5.753

7.  Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays.

Authors:  Renate Schmidt; Anastassia Boudichevskaia; Hieu Xuan Cao; Sang He; Rhonda Christiane Meyer; Jochen Christoph Reif
Journal:  Plant Cell Rep       Date:  2017-08-30       Impact factor: 4.570

8.  Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation.

Authors:  Kris Van Poucke; Annelies Haegeman; Thomas Goedefroit; Fran Focquet; Leen Leus; Marília Horta Jung; Corina Nave; Miguel Angel Redondo; Claude Husson; Kaloyan Kostov; Aneta Lyubenova; Petya Christova; Anne Chandelier; Slavcho Slavov; Arthur de Cock; Peter Bonants; Sabine Werres; Jonàs Oliva Palau; Benoit Marçais; Thomas Jung; Jan Stenlid; Tom Ruttink; Kurt Heungens
Journal:  IMA Fungus       Date:  2021-07-01       Impact factor: 3.515

9.  RNA-Seq Based Analysis of Population Structure within the Maize Inbred B73.

Authors:  Zhikai Liang; James C Schnable
Journal:  PLoS One       Date:  2016-06-27       Impact factor: 3.240

10.  Controlling for genetic identity of varieties, pollen contamination and stigma receptivity is essential to characterize the self-incompatibility system of Olea europaea L.

Authors:  Pierre Saumitou-Laprade; Philippe Vernet; Xavier Vekemans; Vincent Castric; Gianni Barcaccia; Bouchaïb Khadari; Luciana Baldoni
Journal:  Evol Appl       Date:  2017-06-29       Impact factor: 5.183
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