Literature DB >> 20375232

Development of a loop-mediated isothermal amplification assay for rapid detection of subgroup J avian leukosis virus.

Xiaotao Zhang1, Ming Liao, Peirong Jiao, Kaijian Luo, Henan Zhang, Tao Ren, Guihong Zhang, Chenggang Xu, Chaoan Xin, Weisheng Cao.   

Abstract

Infection of breeder flocks in China with subgroup J avian leukosis virus (ALV-J) has increased recently. In this study, we have developed a loop-mediated isothermal amplification (LAMP) assay for rapid detection of ALV-J from culture isolates and clinical samples. The ALV-J-specific LAMP assay efficiently amplified the target gene within 45 min at 63 degrees C using only a simple laboratory water bath. To determine the specificity of the LAMP assay, various subgroup ALVs and other related viruses were detected. A ladder pattern on gel electrophoresis was observed for ALV-J isolates but not for other viruses. To evaluate the sensitivities of the LAMP assay and conventional PCR, the NX0101 isolate plasmid DNA was amplified by them. The detection limit of the LAMP assay was 5 target gene copies/reaction, which was up to 20 times higher than that of conventional PCR. To evaluate the application of the LAMP assay for detection of ALV-J in clinical samples, 49 samples suspected of ALV infection from breeder flocks were tested by the LAMP assay and PCR. Moreover, virus isolation from these samples was also performed using cell culture. The positive-sample ratios were 21/49 (43%) by conventional PCR, 26/49 (53%) by the LAMP assay, and 19/46 (41%) by virus isolation. Additionally, a positive LAMP reaction can be visually ascertained by the observation of turbidity or a color change after addition of SYBR green I dye. Consequently, the LAMP assay is a simple, rapid, and sensitive diagnostic method and can potentially be developed for rapid detection of ALV-J infection in the field.

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Year:  2010        PMID: 20375232      PMCID: PMC2884476          DOI: 10.1128/JCM.02530-09

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  25 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation.

Authors:  Y Mori; K Nagamine; N Tomita; T Notomi
Journal:  Biochem Biophys Res Commun       Date:  2001-11-23       Impact factor: 3.575

3.  Comparison of Chinese field strains of avian leukosis subgroup J viruses with prototype strain HPRS-103 and United States strains.

Authors:  Zhizhong Cui; Yan Du; Zhi Zhang; R F Silva
Journal:  Avian Dis       Date:  2003 Oct-Dec       Impact factor: 1.577

4.  Nested polymerase chain reaction for detection of the avian leukosis virus causing so-called fowl glioma.

Authors:  H Hatai; K Ochiai; Y Tomioka; T Toyoda; K Hayashi; M Anada; M Kato; A Toda; K Ohashi; E Ono; T Kimura; T Umemura
Journal:  Avian Pathol       Date:  2005-12       Impact factor: 3.378

5.  Rapid diagnostic method for detection of mumps virus genome by loop-mediated isothermal amplification.

Authors:  Takao Okafuji; Naoko Yoshida; Motoko Fujino; Yoshie Motegi; Toshiaki Ihara; Yoshinori Ota; Tsugunori Notomi; Tetsuo Nakayama
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

6.  Na+/H+ exchanger type 1 is a receptor for pathogenic subgroup J avian leukosis virus.

Authors:  Ning Chai; Paul Bates
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-27       Impact factor: 11.205

7.  Development of a loop-mediated isothermal amplification assay for rapid detection of BK virus.

Authors:  Bipin Raj Bista; Chandra Ishwad; Robert M Wadowsky; Pradip Manna; Parmjeet Singh Randhawa; Gaurav Gupta; Meena Adhikari; Rakhi Tyagi; Gina Gasper; Abhay Vats
Journal:  J Clin Microbiol       Date:  2007-02-21       Impact factor: 5.948

8.  Rapid detection of HIV-1 by reverse-transcription, loop-mediated isothermal amplification (RT-LAMP).

Authors:  Kelly A Curtis; Donna L Rudolph; S Michele Owen
Journal:  J Virol Methods       Date:  2008-06-03       Impact factor: 2.014

9.  Assessing the roles of endogenous retrovirus EAV-HP in avian leukosis virus subgroup J emergence and tolerance.

Authors:  Melanie A Sacco; Ken Howes; Lorraine P Smith; Venugopal K Nair
Journal:  J Virol       Date:  2004-10       Impact factor: 5.103

10.  Performance of meat-type chickens test-positive and -negative for lymphoid leukosis virus infection.

Authors:  J S Gavora; J L Spencer; J R Chambers
Journal:  Avian Pathol       Date:  1982       Impact factor: 3.378

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  19 in total

1.  Development and application of real-time PCR for detection of subgroup J avian leukosis virus.

Authors:  Liting Qin; Yulong Gao; Wei Ni; Meiyu Sun; Yongqiang Wang; Chunhong Yin; Xiaole Qi; Honglei Gao; Xiaomei Wang
Journal:  J Clin Microbiol       Date:  2012-10-24       Impact factor: 5.948

2.  Smart Cup: A Minimally-Instrumented, Smartphone-Based Point-of-Care Molecular Diagnostic Device.

Authors:  Shih-Chuan Liao; Jing Peng; Michael G Mauk; Sita Awasthi; Jinzhao Song; Harvey Friedman; Haim H Bau; Changchun Liu
Journal:  Sens Actuators B Chem       Date:  2016-06-28       Impact factor: 7.460

3.  Digital LAMP in a sample self-digitization (SD) chip.

Authors:  Alexander Gansen; Alison M Herrick; Ivan K Dimov; Luke P Lee; Daniel T Chiu
Journal:  Lab Chip       Date:  2012-03-07       Impact factor: 6.799

4.  Development and application of a SYBR green real-time PCR for detection of the emerging avian leukosis virus subgroup K.

Authors:  Jian Chen; Zijun Zhao; Yangyijun Chen; Jie Zhang; Lifu Yan; Xiaocui Zheng; Ming Liao; Weisheng Cao
Journal:  Poult Sci       Date:  2018-07-01       Impact factor: 3.352

5.  Rapid detection of hepatitis B virus in blood plasma by a specific and sensitive loop-mediated isothermal amplification assay.

Authors:  Dougbeh-Chris Nyan; Laura E Ulitzky; Nicoleta Cehan; Phillip Williamson; Valerie Winkelman; Maria Rios; Deborah R Taylor
Journal:  Clin Infect Dis       Date:  2014-04-04       Impact factor: 9.079

6.  Development and application of a multiplex PCR method for rapid differential detection of subgroup A, B, and J avian leukosis viruses.

Authors:  Qi Gao; Bingling Yun; Qi Wang; Lili Jiang; Haibo Zhu; Yanni Gao; Liting Qin; Yongqiang Wang; Xiaole Qi; Honglei Gao; Xiaomei Wang; Yulong Gao
Journal:  J Clin Microbiol       Date:  2013-10-16       Impact factor: 5.948

7.  Development and evaluation of a loop-mediated isothermal amplification assay for the rapid detection of porcine cytomegalovirus under field conditions.

Authors:  Jin-Long Yang; Su-Hui Zhang; Zuo-Hua Liu; Rui Yang; Yong Huang; Ming Wen
Journal:  Virol J       Date:  2012-12-29       Impact factor: 4.099

8.  Development and application of SYBR Green I real-time PCR assay for the separate detection of subgroup J Avian leukosis virus and multiplex detection of avian leukosis virus subgroups A and B.

Authors:  Manman Dai; Min Feng; Di Liu; Weisheng Cao; Ming Liao
Journal:  Virol J       Date:  2015-04-03       Impact factor: 4.099

9.  Preparation of a novel monoclonal antibody against Avian leukosis virus subgroup J Gp85 protein and identification of its epitope.

Authors:  Houkun Wang; Xueyang Chen; Lilin Zhu; Xiaowei Fang; Keli Gao; Chun Fang; Jing Liu; Yufang Gu; Xiongyan Liang; Yuying Yang
Journal:  Poult Sci       Date:  2021-03-12       Impact factor: 3.352

10.  Rapid detection of the common avian leukosis virus subgroups by real-time loop-mediated isothermal amplification.

Authors:  Hao Peng; Lili Qin; Yuyu Bi; Peikun Wang; Guangzhen Zou; Jun Li; Yongli Yang; Xingfu Zhong; Ping Wei
Journal:  Virol J       Date:  2015-11-24       Impact factor: 4.099

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