Literature DB >> 20375162

The crystal structure of D212 from sulfolobus spindle-shaped virus ragged hills reveals a new member of the PD-(D/E)XK nuclease superfamily.

Smita K Menon1, Brian J Eilers, Mark J Young, C Martin Lawrence.   

Abstract

Structural studies have made significant contributions to our understanding of Sulfolobus spindle-shaped viruses (Fuselloviridae), an important model system for archaeal viruses. Continuing these efforts, we report the structure of D212 from Sulfolobus spindle-shaped virus Ragged Hills. The overall fold and conservation of active site residues place D212 in the PD-(D/E)XK nuclease superfamily. The greatest structural similarity is found to the archaeal Holliday junction cleavage enzymes, strongly suggesting a role in DNA replication, repair, or recombination. Other roles associated with nuclease activity are also considered.

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Year:  2010        PMID： 20375162      PMCID： PMC2876643          DOI： 10.1128/JVI.01663-09

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  58 in total

1.  Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition.

Authors:  T Nishino; K Komori; D Tsuchiya; Y Ishino; K Morikawa
Journal:  Structure       Date:  2001-03-07       Impact factor: 5.006

2.  Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles.

Authors:  J M Bujnicki; L Rychlewski
Journal:  J Mol Microbiol Biotechnol       Date:  2001-01

3.  Unexpected structural diversity in DNA recombination: the restriction endonuclease connection.

Authors:  A B Hickman; Y Li; S V Mathew; E W May; N L Craig; F Dyda
Journal:  Mol Cell       Date:  2000-06       Impact factor: 17.970

4.  DNA-induced conformational changes in type II restriction endonucleases: the structure of unliganded HincII.

Authors:  Elizabeth J Little; Nancy C Horton
Journal:  J Mol Biol       Date:  2005-08-05       Impact factor: 5.469

5.  The SSV1 viral integrase is not essential.

Authors:  Adam J Clore; Kenneth M Stedman
Journal:  Virology       Date:  2006-12-18       Impact factor: 3.616

6.  Structural recognition between a four-way DNA junction and a resolving enzyme.

Authors:  Anne-Cécile Déclais; Jia Liu; Alasdair D J Freeman; David M J Lilley
Journal:  J Mol Biol       Date:  2006-05-02       Impact factor: 5.469

7.  Sulfolobus tengchongensis spindle-shaped virus STSV1: virus-host interactions and genomic features.

Authors:  Xiaoyu Xiang; Lanming Chen; Xiaoxing Huang; Yuanmin Luo; Qunxin She; Li Huang
Journal:  J Virol       Date:  2005-07       Impact factor: 5.103

8.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

9.  The integrase family of site-specific recombinases: regional similarities and global diversity.

Authors:  P Argos; A Landy; K Abremski; J B Egan; E Haggard-Ljungquist; R H Hoess; M L Kahn; B Kalionis; S V Narayana; L S Pierson
Journal:  EMBO J       Date:  1986-02       Impact factor: 11.598

10.  Topology of Type II REases revisited; structural classes and the common conserved core.

Authors:  Masha Y Niv; Daniel R Ripoll; Jorge A Vila; Adam Liwo; Eva S Vanamee; Aneel K Aggarwal; Harel Weinstein; Harold A Scheraga
Journal:  Nucleic Acids Res       Date:  2007-03-16       Impact factor: 16.971
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  15 in total

1.  Structural studies of E73 from a hyperthermophilic archaeal virus identify the "RH3" domain, an elaborated ribbon-helix-helix motif involved in DNA recognition.

Authors:  Casey Schlenker; Anupam Goel; Brian P Tripet; Smita Menon; Taylor Willi; Mensur Dlakić; Mark J Young; C Martin Lawrence; Valérie Copié
Journal:  Biochemistry       Date:  2012-03-22       Impact factor: 3.162

2.  The structure of an archaeal viral integrase reveals an evolutionarily conserved catalytic core yet supports a mechanism of DNA cleavage in trans.

Authors:  Brian J Eilers; Mark J Young; C Martin Lawrence
Journal:  J Virol       Date:  2012-05-16       Impact factor: 5.103

Review 3.  Molecular biology of fuselloviruses and their satellites.

Authors:  Patrizia Contursi; Salvatore Fusco; Raffaele Cannio; Qunxin She
Journal:  Extremophiles       Date:  2014-02-23       Impact factor: 2.395

4.  Telomere-targeted retrotransposons in the rice blast fungus Magnaporthe oryzae: agents of telomere instability.

Authors:  John H Starnes; David W Thornbury; Olga S Novikova; Cathryn J Rehmeyer; Mark L Farman
Journal:  Genetics       Date:  2012-03-23       Impact factor: 4.562

Review 5.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

6.  Csx3 is a cyclic oligonucleotide phosphodiesterase associated with type III CRISPR-Cas that degrades the second messenger cA4.

Authors:  Sharidan Brown; Colin C Gauvin; Alexander A Charbonneau; Nathaniel Burman; C Martin Lawrence
Journal:  J Biol Chem       Date:  2020-08-21       Impact factor: 5.157

7.  Novel Sulfolobus Fuselloviruses with Extensive Genomic Variations.

Authors:  Junxia Zhang; Xiaowei Zheng; Haina Wang; Hongchen Jiang; Hailiang Dong; Li Huang
Journal:  J Virol       Date:  2020-01-31       Impact factor: 5.103

8.  Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids.

Authors:  Emmanuelle R J Quemin; Maija K Pietilä; Hanna M Oksanen; Patrick Forterre; W Irene C Rijpstra; Stefan Schouten; Dennis H Bamford; David Prangishvili; Mart Krupovic
Journal:  J Virol       Date:  2015-09-09       Impact factor: 5.103

9.  Extreme Mutation Tolerance: Nearly Half of the Archaeal Fusellovirus Sulfolobus Spindle-Shaped Virus 1 Genes Are Not Required for Virus Function, Including the Minor Capsid Protein Gene vp3.

Authors:  Eric A Iverson; David A Goodman; Madeline E Gorchels; Kenneth M Stedman
Journal:  J Virol       Date:  2017-04-28       Impact factor: 5.103

10.  Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily.

Authors:  Kamil Steczkiewicz; Anna Muszewska; Lukasz Knizewski; Leszek Rychlewski; Krzysztof Ginalski
Journal:  Nucleic Acids Res       Date:  2012-05-25       Impact factor: 16.971
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