Literature DB >> 20363646

Top-down mass spectrometry for sequencing of larger (up to 61 nt) RNA by CAD and EDD.

Monika Taucher1, Kathrin Breuker.   

Abstract

We have studied the effect of solution additives on hydrolysis and charge state distribution in ESI MS of RNA. Lower and higher charge state ions can be electrosprayed from solutions containing 25 mM piperidine/25 mM imidazole and 1% vol. triethylamine, respectively, with base-catalyzed hydrolysis rates that are sufficiently slow to perform MS/MS experiments. These lower and higher charge state ions are suitable as precursors for CAD and EDD, respectively. We demonstrate nearly complete sequence coverage for 61 nt RNA dissociated by CAD, and 34 nt RNA dissociated by EDD, and suggest a mechanism for backbone fragmentation in EDD of RNA. Copyright 2010 American Society for Mass Spectrometry. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20363646     DOI: 10.1016/j.jasms.2010.02.025

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  42 in total

1.  Activated ion electron capture dissociation for mass spectral sequencing of larger (42 kDa) proteins.

Authors:  D M Horn; Y Ge; F W McLafferty
Journal:  Anal Chem       Date:  2000-10-15       Impact factor: 6.986

Review 2.  Small interfering RNAs and their chemical synthesis.

Authors:  Ronald Micura
Journal:  Angew Chem Int Ed Engl       Date:  2002-07-02       Impact factor: 15.336

Review 3.  Activation of large ions in FT-ICR mass spectrometry.

Authors:  Julia Laskin; Jean H Futrell
Journal:  Mass Spectrom Rev       Date:  2005 Mar-Apr       Impact factor: 10.946

Review 4.  Non-coding RNAs: hope or hype?

Authors:  Alexander Hüttenhofer; Peter Schattner; Norbert Polacek
Journal:  Trends Genet       Date:  2005-05       Impact factor: 11.639

5.  Characterization of nucleic acid higher order structure by high-resolution tandem mass spectrometry.

Authors:  Jingjie Mo; Kristina Håkansson
Journal:  Anal Bioanal Chem       Date:  2006-07-20       Impact factor: 4.142

6.  Extending top-down mass spectrometry to proteins with masses greater than 200 kilodaltons.

Authors:  Xuemei Han; Mi Jin; Kathrin Breuker; Fred W McLafferty
Journal:  Science       Date:  2006-10-06       Impact factor: 47.728

7.  Distinguishing glucuronic from iduronic acid in glycosaminoglycan tetrasaccharides by using electron detachment dissociation.

Authors:  Jeremy J Wolff; Lianli Chi; Robert J Linhardt; I Jonathan Amster
Journal:  Anal Chem       Date:  2007-01-25       Impact factor: 6.986

Review 8.  Top-down MS, a powerful complement to the high capabilities of proteolysis proteomics.

Authors:  Fred W McLafferty; Kathrin Breuker; Mi Jin; Xuemei Han; Giuseppe Infusini; Honghai Jiang; Xianglei Kong; Tadhg P Begley
Journal:  FEBS J       Date:  2007-11-16       Impact factor: 5.542

9.  Minimizing base loss and internal fragmentation in collisionally activated dissociation of multiply deprotonated RNA.

Authors:  Monika Taucher; Ulrike Rieder; Kathrin Breuker
Journal:  J Am Soc Mass Spectrom       Date:  2009-10-21       Impact factor: 3.109

10.  EVALUATION OF THE EXPERIMENTAL PARAMETERS WHICH CONTROL ELECTRON DETACHMENT DISSOCIATION, AND THEIR EFFECT ON THE FRAGMENTATION EFFICIENCY OF GLYCOSAMINOGLYCAN CARBOHYDRATES.

Authors:  Franklin E Leach; Jeremy J Wolff; Tatiana N Laremore; Robert J Linhardt; I Jonathan Amster
Journal:  Int J Mass Spectrom       Date:  2008-10-01       Impact factor: 1.986

View more
  22 in total

1.  Chimeric MicroRNA-1291 Biosynthesized Efficiently in Escherichia coli Is Effective to Reduce Target Gene Expression in Human Carcinoma Cells and Improve Chemosensitivity.

Authors:  Mei-Mei Li; Balasubrahmanyam Addepalli; Mei-Juan Tu; Qiu-Xia Chen; Wei-Peng Wang; Patrick A Limbach; Janine M LaSalle; Su Zeng; Min Huang; Ai-Ming Yu
Journal:  Drug Metab Dispos       Date:  2015-05-01       Impact factor: 3.922

2.  Characterization of oligodeoxynucleotides and modifications by 193 nm photodissociation and electron photodetachment dissociation.

Authors:  Suncerae I Smith; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2010-09-01       Impact factor: 6.986

Review 3.  Top-down mass spectrometry: recent developments, applications and perspectives.

Authors:  Weidong Cui; Henry W Rohrs; Michael L Gross
Journal:  Analyst       Date:  2011-08-08       Impact factor: 4.616

4.  Bioengineering Novel Chimeric microRNA-34a for Prodrug Cancer Therapy: High-Yield Expression and Purification, and Structural and Functional Characterization.

Authors:  Wei-Peng Wang; Pui Yan Ho; Qiu-Xia Chen; Balasubrahmanyam Addepalli; Patrick A Limbach; Mei-Mei Li; Wen-Juan Wu; Joseph L Jilek; Jing-Xin Qiu; Hong-Jian Zhang; Tianhong Li; Theodore Wun; Ralph DeVere White; Kit S Lam; Ai-Ming Yu
Journal:  J Pharmacol Exp Ther       Date:  2015-05-28       Impact factor: 4.030

5.  Ribonucleic Acid Sequence Characterization by Negative Electron Transfer Dissociation Mass Spectrometry.

Authors:  Trenton M Peters-Clarke; Qiuwen Quan; Dain R Brademan; Alexander S Hebert; Michael S Westphall; Joshua J Coon
Journal:  Anal Chem       Date:  2020-03-05       Impact factor: 6.986

6.  Competitive binding sites of a ruthenium arene anticancer complex on oligonucleotides studied by mass spectrometry: ladder-sequencing versus top-down.

Authors:  Kui Wu; Wenbing Hu; Qun Luo; Xianchan Li; Shaoxiang Xiong; Peter J Sadler; Fuyi Wang
Journal:  J Am Soc Mass Spectrom       Date:  2013-02-13       Impact factor: 3.109

Review 7.  Recent developments in the characterization of nucleic acids by liquid chromatography, capillary electrophoresis, ion mobility, and mass spectrometry (2010-2020).

Authors:  Inês C Santos; Jennifer S Brodbelt
Journal:  J Sep Sci       Date:  2020-10-15       Impact factor: 3.645

8.  A personal perspective on chemistry-driven RNA research.

Authors:  Ronald Micura; Christoph Kreutz; Kathrin Breuker
Journal:  Biopolymers       Date:  2013-12       Impact factor: 2.505

9.  A natural riboswitch scaffold with self-methylation activity.

Authors:  Laurin Flemmich; Sarah Heel; Sarah Moreno; Kathrin Breuker; Ronald Micura
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

10.  Characterization of modified RNA by top-down mass spectrometry.

Authors:  Monika Taucher; Kathrin Breuker
Journal:  Angew Chem Int Ed Engl       Date:  2012-10-08       Impact factor: 15.336

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.