Literature DB >> 32974962

Recent developments in the characterization of nucleic acids by liquid chromatography, capillary electrophoresis, ion mobility, and mass spectrometry (2010-2020).

Inês C Santos1, Jennifer S Brodbelt1.   

Abstract

The development of new strategies for the analysis of nucleic acids has gained momentum due to the increased interest in using these biomolecules as drugs or drug targets. The application of new mass spectrometry ion activation techniques and the optimization of separation methods including liquid chromatography, capillary electrophoresis, and ion mobility have allowed more detailed characterization of nucleic acids and oligonucleotide therapeutics including confirmation of sequence, localization of modifications and interaction sites, and structural analysis as well as identification of failed sequences and degradation products. This review will cover tandem mass spectrometry methods as well as the recent developments in liquid chromatography, capillary electrophoresis, and ion mobility coupled to mass spectrometry for the analysis of nucleic acids and oligonucleotides.
© 2020 Wiley-VCH GmbH.

Entities:  

Keywords:  capillary electrophoresis; ion mobility; liquid chromatography; mass spectrometry; nucleic acids

Mesh:

Substances:

Year:  2020        PMID: 32974962      PMCID: PMC8378248          DOI: 10.1002/jssc.202000833

Source DB:  PubMed          Journal:  J Sep Sci        ISSN: 1615-9306            Impact factor:   3.645


  169 in total

1.  Tandem mass spectrometry of platinated quadruplex DNA.

Authors:  Silvan R Stucki; Adrien Nyakas; Stefan Schürch
Journal:  J Mass Spectrom       Date:  2011-12       Impact factor: 1.982

2.  Revealing cooperative binding of polycationic cyclodextrins with DNA oligomers by capillary electrophoresis coupled to mass spectrometry.

Authors:  Cédric Przybylski; Juan M Benito; Véronique Bonnet; Carmen Ortiz Mellet; José M García Fernández
Journal:  Anal Chim Acta       Date:  2017-11-22       Impact factor: 6.558

3.  Phosphorothioate oligonucleotide quantification by μ-liquid chromatography-mass spectrometry.

Authors:  Robert Erb; Katharina Leithner; Andreas Bernkop-Schnürch; Herbert Oberacher
Journal:  AAPS J       Date:  2012-07-18       Impact factor: 4.009

Review 4.  The Current Revolution in Cryo-EM.

Authors:  Edward H Egelman
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

Review 5.  Review on investigations of antisense oligonucleotides with the use of mass spectrometry.

Authors:  Sylwia Studzińska
Journal:  Talanta       Date:  2017-08-12       Impact factor: 6.057

6.  Small alkyl amines as ion-pair reagents for the separation of positional isomers of impurities in phosphate diester oligonucleotides.

Authors:  Stilianos G Roussis; Megan Pearce; Claus Rentel
Journal:  J Chromatogr A       Date:  2019-02-12       Impact factor: 4.759

7.  Tertiary structural elements determine the extent and specificity of messenger RNA editing.

Authors:  Leila E Rieder; Cynthia J Staber; Barry Hoopengardner; Robert A Reenan
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

8.  Ion Mobility-Mass Spectrometry Reveals Details of Formation and Structure for GAA·TCC DNA and RNA Triplexes.

Authors:  Jiawei Li; Alexander Begbie; Belinda J Boehm; Alexander Button; Charles Whidborne; Yannii Pouferis; David M Huang; Tara L Pukala
Journal:  J Am Soc Mass Spectrom       Date:  2018-10-19       Impact factor: 3.109

Review 9.  Locked nucleic acid: modality, diversity, and drug discovery.

Authors:  Peter H Hagedorn; Robert Persson; Erik D Funder; Nanna Albæk; Sanna L Diemer; Dennis J Hansen; Marianne R Møller; Natalia Papargyri; Helle Christiansen; Bo R Hansen; Henrik F Hansen; Mads A Jensen; Troels Koch
Journal:  Drug Discov Today       Date:  2017-10-06       Impact factor: 7.851

10.  Ammonium ion binding to DNA G-quadruplexes: do electrospray mass spectra faithfully reflect the solution-phase species?

Authors:  Françoise Balthasart; Janez Plavec; Valérie Gabelica
Journal:  J Am Soc Mass Spectrom       Date:  2012-11-07       Impact factor: 3.109

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  2 in total

1.  Tandem mass spectrometric sequence characterization of synthetic thymidine-rich oligonucleotides.

Authors:  A M Abdullah; Cynthia Sommers; Jessica Hawes; Jason D Rodriguez; Kui Yang
Journal:  J Mass Spectrom       Date:  2022-03-10       Impact factor: 2.394

Review 2.  Regulatory guidelines and preclinical tools to study the biodistribution of RNA therapeutics.

Authors:  P Vervaeke; S E Borgos; N N Sanders; F Combes
Journal:  Adv Drug Deliv Rev       Date:  2022-03-26       Impact factor: 17.873

  2 in total

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