Literature DB >> 20357889

Stigmergic gene transfer and emergence of universal coding.

Mikhail Prokopenko, Daniel Polani, Matthew Chadwick.   

Abstract

We consider a simple information-theoretic model for evolutionary dynamics approaching the "coding threshold," where the capacity to symbolically represent nucleic acid sequences emerges in response to a change in environmental conditions. We study the conditions when a coupling between the dynamics of a "proto-cell" and its proto-symbolic representation becomes beneficial in terms of preserving the proto-cell's information in a noisy environment. In particular, we are interested in understanding the behavior at the "error threshold" level, which, in our case, turns out to be a whole "error interval." The useful coupling is accompanied by self-organization of internal processing, i.e., an increase in complexity within the evolving system. Second, we study whether and how different proto-cells can stigmergically share such information via a joint encoding, even if they have slightly different individual dynamics. Implications for the emergence of biological genetic code are discussed.

Year:  2009        PMID: 20357889      PMCID: PMC2801532          DOI: 10.2976/1.3175813

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  10 in total

Review 1.  Stigmergy, self-organization, and sorting in collective robotics.

Authors:  O Holland; C Melhuish
Journal:  Artif Life       Date:  1999       Impact factor: 0.667

2.  The metabolic cost of neural information.

Authors:  S B Laughlin; R R de Ruyter van Steveninck; J C Anderson
Journal:  Nat Neurosci       Date:  1998-05       Impact factor: 24.884

Review 3.  A new biology for a new century.

Authors:  Carl R Woese
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

4.  Collective evolution and the genetic code.

Authors:  Kalin Vetsigian; Carl Woese; Nigel Goldenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-03       Impact factor: 11.205

5.  Representations of space and time in the maximization of information flow in the perception-action loop.

Authors:  Alexander S Klyubin; Daniel Polani; Chrystopher L Nehaniv
Journal:  Neural Comput       Date:  2007-09       Impact factor: 2.026

6.  Local information transfer as a spatiotemporal filter for complex systems.

Authors:  Joseph T Lizier; Mikhail Prokopenko; Albert Y Zomaya
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-02-15

7.  The universal ancestor.

Authors:  C Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

8.  The concept of cellular evolution.

Authors:  C R Woese; G E Fox
Journal:  J Mol Evol       Date:  1977-09-20       Impact factor: 2.395

9.  On the evolution of the genetic code.

Authors:  C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1965-12       Impact factor: 11.205

Review 10.  Selforganization of matter and the evolution of biological macromolecules.

Authors:  M Eigen
Journal:  Naturwissenschaften       Date:  1971-10
  10 in total
  3 in total

1.  Guided self-organization.

Authors:  Mikhail Prokopenko
Journal:  HFSP J       Date:  2009-10-07

2.  Zipf's Law: Balancing Signal Usage Cost and Communication Efficiency.

Authors:  Christoph Salge; Nihat Ay; Daniel Polani; Mikhail Prokopenko
Journal:  PLoS One       Date:  2015-10-01       Impact factor: 3.240

Review 3.  The Awareness of the Fascial System.

Authors:  Bruno Bordoni; Marta Simonelli
Journal:  Cureus       Date:  2018-10-01
  3 in total

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