Literature DB >> 16818880

Collective evolution and the genetic code.

Kalin Vetsigian1, Carl Woese, Nigel Goldenfeld.   

Abstract

A dynamical theory for the evolution of the genetic code is presented, which accounts for its universality and optimality. The central concept is that a variety of collective, but non-Darwinian, mechanisms likely to be present in early communal life generically lead to refinement and selection of innovation-sharing protocols, such as the genetic code. Our proposal is illustrated by using a simplified computer model and placed within the context of a sequence of transitions that early life may have made, before the emergence of vertical descent.

Mesh：

Year:  2006        PMID： 16818880      PMCID： PMC1502294          DOI： 10.1073/pnas.0603780103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  23 in total

Review 1.  Rewiring the keyboard: evolvability of the genetic code.

Authors:  R D Knight; S J Freeland; L F Landweber
Journal:  Nat Rev Genet       Date:  2001-01       Impact factor: 53.242

Review 2.  Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process.

Authors:  C R Woese; G J Olsen; M Ibba; D Söll
Journal:  Microbiol Mol Biol Rev       Date:  2000-03       Impact factor: 11.056

3.  On the evolution of redundancy in genetic codes.

Authors:  D H Ardell; G Sella
Journal:  J Mol Evol       Date:  2001 Oct-Nov       Impact factor: 2.395

4.  The impact of message mutation on the fitness of a genetic code.

Authors:  Guy Sella; David H Ardell
Journal:  J Mol Evol       Date:  2002-05       Impact factor: 2.395

5.  On the evolution of cells.

Authors:  Carl R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-19       Impact factor: 11.205

6.  No accident: genetic codes freeze in error-correcting patterns of the standard genetic code.

Authors:  David H Ardell; Guy Sella
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-11-29       Impact factor: 6.237

7.  The origin of the genetic code.

Authors:  F H Crick
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

8.  On the fundamental nature and evolution of the genetic code.

Authors:  C R Woese; D H Dugre; S A Dugre; M Kondo; W C Saxinger
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1966

9.  On the evolution of the genetic code.

Authors:  C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1965-12       Impact factor: 11.205

10.  The evolutionary history of Cys-tRNACys formation.

Authors:  Patrick O'Donoghue; Anurag Sethi; Carl R Woese; Zaida A Luthey-Schulten
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-27       Impact factor: 11.205
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  95 in total

1.  Stigmergic gene transfer and emergence of universal coding.

Authors:  Mikhail Prokopenko; Daniel Polani; Matthew Chadwick
Journal:  HFSP J       Date:  2009-08-06

Review 2.  Archaea--timeline of the third domain.

Authors:  Ricardo Cavicchioli
Journal:  Nat Rev Microbiol       Date:  2010-12-06       Impact factor: 60.633

3.  Proteome evolution and the metabolic origins of translation and cellular life.

Authors:  Derek Caetano-Anollés; Kyung Mo Kim; Jay E Mittenthal; Gustavo Caetano-Anollés
Journal:  J Mol Evol       Date:  2010-11-17       Impact factor: 2.395

4.  Evolvability Is an Evolved Ability: The Coding Concept as the Arch-Unit of Natural Selection.

Authors:  Srdja Janković; Milan M Ćirković
Journal:  Orig Life Evol Biosph       Date:  2015-09-29       Impact factor: 1.950

5.  Does the Ribosome Challenge our Understanding of the RNA World?

Authors:  Anthony M Poole; Daniel C Jeffares; Marc P Hoeppner; David Penny
Journal:  J Mol Evol       Date:  2015-11-18       Impact factor: 2.395

6.  Toward an evolutionary-predictive foundation for creativity : Commentary on "Human creativity, evolutionary algorithms, and predictive representations: The mechanics of thought trials" by Arne Dietrich and Hilde Haider, 2014 (Accepted pending minor revisions for publication in Psychonomic Bulletin & Review).

Authors:  Liane Gabora; Stuart Kauffman
Journal:  Psychon Bull Rev       Date:  2016-04

7.  Emergence of the universal genetic code imprinted in an RNA record.

Authors:  Michael J Hohn; Hee-Sung Park; Patrick O'Donoghue; Michael Schnitzbauer; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-16       Impact factor: 11.205

8.  An asymmetric underlying rule in the assignment of codons: possible clue to a quick early evolution of the genetic code via successive binary choices.

Authors:  Marc Delarue
Journal:  RNA       Date:  2006-12-12       Impact factor: 4.942

9.  A natural genetic code expansion cassette enables transmissible biosynthesis and genetic encoding of pyrrolysine.

Authors:  David G Longstaff; Ross C Larue; Joseph E Faust; Anirban Mahapatra; Liwen Zhang; Kari B Green-Church; Joseph A Krzycki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-04       Impact factor: 11.205

10.  Enzyme-driven speciation: crystallizing Archaea via lipid capture.

Authors:  Jian Payandeh; Emil F Pai
Journal:  J Mol Evol       Date:  2007-01-25       Impact factor: 2.395
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