Literature DB >> 20356054

Radical directed dissociation for facile identification of iodotyrosine residues using electrospray ionization mass spectrometry.

Qingyu Sun1, Sheng Yin, Joseph A Loo, Ryan R Julian.   

Abstract

Iodination of tyrosine residues in proteins has many uses in chemistry, biology, and medicine. Site specific identification of the sites of iodination is important for many of these uses. Reported herein is a facile method employing photodissociation and mass spectrometry to localize sites of iodination in whole proteins. Absorption of ultraviolet photons by iodotyrosine results in loss of iodine via homolytic bond dissociation. The resulting protein radical fragments in the vicinity of the iodotyrosine upon collisional activation. Analysis of the fragments within the vicinity of each tyrosine residue in the protein enables quantitative evaluation of the likelihood for iodination at each site. The results are compared with both traditional bottom up and top down mass spectrometric methods. Radical directed dissociation yields results in agreement with traditional approaches but requires significantly less effort and is inherently more sensitive. One limitation occurs when multiple tyrosine residues are in close proximity, in which case the extent of iodination at each residue may be difficult to determine. This limitation is frequently problematic for traditional approaches as well.

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Year:  2010        PMID: 20356054      PMCID: PMC2878766          DOI: 10.1021/ac100256v

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  20 in total

1.  Peptide photodissociation at 157 nm in a linear ion trap mass spectrometer.

Authors:  Tae-Young Kim; Matthew S Thompson; James P Reilly
Journal:  Rapid Commun Mass Spectrom       Date:  2005       Impact factor: 2.419

2.  Residue-specific radical-directed dissociation of whole proteins in the gas phase.

Authors:  Tony Ly; Ryan R Julian
Journal:  J Am Chem Soc       Date:  2007-12-14       Impact factor: 15.419

3.  Site-specific radical directed dissociation of peptides at phosphorylated residues.

Authors:  Jolene K Diedrich; Ryan R Julian
Journal:  J Am Chem Soc       Date:  2008-08-19       Impact factor: 15.419

4.  Side chain chemistry mediates backbone fragmentation in hydrogen deficient peptide radicals.

Authors:  Qingyu Sun; Hosea Nelson; Tony Ly; Brian M Stoltz; Ryan R Julian
Journal:  J Proteome Res       Date:  2009-02       Impact factor: 4.466

5.  Novel approach to phasing proteins: derivatization by short cryo-soaking with halides.

Authors:  Z Dauter; M Dauter; K R Rajashankar
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-02

6.  Deciphering the peptide iodination code: influence on subsequent gas-phase radical generation with photodissociation ESI-MS.

Authors:  Zhenjiu Liu; Ryan R Julian
Journal:  J Am Soc Mass Spectrom       Date:  2008-12-31       Impact factor: 3.109

7.  Dosimetric evaluation and therapeutic response to internal radiation therapy of hepatocarcinomas using iodine-131-labelled lipiodol.

Authors:  Stéphanie Becker; Sophie Laffont; Fabien Vitry; Yan Rolland; Joseph Lecloirec; Eveline Boucher; Jean-Luc Raoul; Jean-Yves Herry; Patrick Bourguet; Etienne Garin
Journal:  Nucl Med Commun       Date:  2008-09       Impact factor: 1.690

8.  Tracking radical migration in large hydrogen deficient peptides with covalent labels: facile movement does not equal indiscriminate fragmentation.

Authors:  Tony Ly; Ryan R Julian
Journal:  J Am Soc Mass Spectrom       Date:  2009-02-12       Impact factor: 3.109

9.  Tyrosine residues modification studied by MALDI-TOF mass spectrometry.

Authors:  Jirí Santrůcek; Martin Strohalm; Vojtech Kadlcík; Radovan Hynek; Milan Kodícek
Journal:  Biochem Biophys Res Commun       Date:  2004-10-29       Impact factor: 3.575

10.  Iodination in relation to thyroglobulin maturation and subunit aggregation.

Authors:  R W Seed; I H Goldberg
Journal:  Science       Date:  1965-09-17       Impact factor: 47.728

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  9 in total

1.  New protein footprinting: fast photochemical iodination combined with top-down and bottom-up mass spectrometry.

Authors:  Jiawei Chen; Weidong Cui; Daryl Giblin; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2012-06-06       Impact factor: 3.109

2.  Exploitation of the Ornithine Effect Enhances Characterization of Stapled and Cyclic Peptides.

Authors:  Christopher M Crittenden; W Ryan Parker; Zachary B Jenner; Kerry A Bruns; Lucas D Akin; William M McGee; Eugene Ciccimaro; Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2016-02-10       Impact factor: 3.109

3.  Shedding light on the frontier of photodissociation.

Authors:  Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2011-01-28       Impact factor: 3.109

4.  Ultraviolet Photodissociation Mass Spectrometry for Analysis of Biological Molecules.

Authors:  Jennifer S Brodbelt; Lindsay J Morrison; Inês Santos
Journal:  Chem Rev       Date:  2019-12-18       Impact factor: 60.622

5.  Comparison of Ultraviolet Photodissociation and Collision Induced Dissociation of Adrenocorticotropic Hormone Peptides.

Authors:  Scott A Robotham; Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2015-06-30       Impact factor: 3.109

Review 6.  Photodissociation mass spectrometry: new tools for characterization of biological molecules.

Authors:  Jennifer S Brodbelt
Journal:  Chem Soc Rev       Date:  2014-01-30       Impact factor: 54.564

7.  Development of Novel Free Radical Initiated Peptide Sequencing Reagent: Application to Identification and Characterization of Peptides by Mass Spectrometry.

Authors:  Kaylee Gaspar; Kimberly Fabijanczuk; Tara Otegui; Jose Acosta; Jinshan Gao
Journal:  J Am Soc Mass Spectrom       Date:  2018-12-13       Impact factor: 3.109

8.  Strategies for generating peptide radical cations via ion/ion reactions.

Authors:  Joshua D Gilbert; Christine M Fisher; Jiexun Bu; Boone M Prentice; James G Redwine; Scott A McLuckey
Journal:  J Mass Spectrom       Date:  2015-02       Impact factor: 1.982

9.  Metal Ion Binding to the Amyloid β Monomer Studied by Native Top-Down FTICR Mass Spectrometry.

Authors:  Frederik Lermyte; James Everett; Yuko P Y Lam; Christopher A Wootton; Jake Brooks; Mark P Barrow; Neil D Telling; Peter J Sadler; Peter B O'Connor; Joanna F Collingwood
Journal:  J Am Soc Mass Spectrom       Date:  2019-07-26       Impact factor: 3.109

  9 in total

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