Literature DB >> 20349519

Urinary proteomics as a novel tool for biomarker discovery in kidney diseases.

Jing Wu1, Yi-ding Chen, Wei Gu.   

Abstract

Urine has become one of the most attractive biofluids in clinical proteomics, for its procurement is easy and noninvasive and it contains sufficient proteins and peptides. Urinary proteomics has thus rapidly developed and has been extensively applied to biomarker discovery in clinical diseases, especially kidney diseases. In this review, we discuss two important aspects of urinary proteomics in detail, namely, sample preparation and proteomic technologies. In addition, data mining in urinary proteomics is also briefly introduced. At last, we present several successful examples on the application of urinary proteomics for biomarker discovery in kidney diseases, including diabetic nephropathy, IgA nephropathy, lupus nephritis, renal Fanconi syndrome, acute kidney injury, and renal allograft rejection.

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Year:  2010        PMID： 20349519      PMCID： PMC2852539          DOI： 10.1631/jzus.B0900327

Source DB:  PubMed          Journal:  J Zhejiang Univ Sci B        ISSN： 1673-1581            Impact factor:   3.066


  51 in total

1.  Proteomic-based identification of cleaved urinary beta2-microglobulin as a potential marker for acute tubular injury in renal allografts.

Authors:  Stefan Schaub; John A Wilkins; Mihaela Antonovici; Oleg Krokhin; Tracey Weiler; David Rush; Peter Nickerson
Journal:  Am J Transplant       Date:  2005-04       Impact factor: 8.086

2.  Proteome analysis of gelatin-bound urinary proteins from patients with bladder cancers.

Authors:  Minoru Saito; Masafumi Kimoto; Teruo Araki; Yukie Shimada; Ryoji Fujii; Ken Oofusa; Michihiro Hide; Tsuguru Usui; Katsutoshi Yoshizato
Journal:  Eur Urol       Date:  2005-11       Impact factor: 20.096

3.  Early prediction of acute renal injury using urinary proteomics.

Authors:  Mai T Nguyen; Gary F Ross; Catherine L Dent; Prasad Devarajan
Journal:  Am J Nephrol       Date:  2005-06-16       Impact factor: 3.754

Review 4.  Utility of mass spectrometry for proteome analysis: part II. Ion-activation methods, statistics, bioinformatics and annotation.

Authors:  Farid E Ahmed
Journal:  Expert Rev Proteomics       Date:  2009-04       Impact factor: 3.940

Review 5.  Mass spectrometry in systems biology: an overview.

Authors:  Xiaojun Feng; Xin Liu; Qingming Luo; Bi-Feng Liu
Journal:  Mass Spectrom Rev       Date:  2008 Nov-Dec       Impact factor: 10.946

6.  High-resolution proteome/peptidome analysis of peptides and low-molecular-weight proteins in urine.

Authors:  Harald Mischak; Bruce A Julian; Jan Novak
Journal:  Proteomics Clin Appl       Date:  2007-07-10       Impact factor: 3.494

7.  Urine proteomics to detect biomarkers for chronic allograft dysfunction.

Authors:  Luís F Quintana; Amanda Solé-Gonzalez; Susana G Kalko; Elisenda Bañon-Maneus; Manel Solé; Fritz Diekmann; Alex Gutierrez-Dalmau; Joaquin Abian; Josep M Campistol
Journal:  J Am Soc Nephrol       Date:  2008-12-03       Impact factor: 10.121

Review 8.  Alternative profiling platform based on MELDI and its applicability in clinical proteomics.

Authors:  Muhammad Najam-ul-Haq; Matthias Rainer; Lukas Trojer; Isabel Feuerstein; Rainer Markus Vallant; Christian W Huck; Rania Bakry; Günther Karl Bonn
Journal:  Expert Rev Proteomics       Date:  2007-08       Impact factor: 3.940

9.  Detection and analysis of urinary peptides by on-line liquid chromatography and mass spectrometry: application to patients with renal Fanconi syndrome.

Authors:  Pedro R Cutillas; Anthony G W Norden; Rainer Cramer; Alma L Burlingame; Robert J Unwin
Journal:  Clin Sci (Lond)       Date:  2003-05       Impact factor: 6.124

10.  Low molecular weight proteins in urines from healthy subjects as well as diabetic, nephropathic and diabetic-nephropathic patients: a MALDI study.

Authors:  Annunziata Lapolla; Roberta Seraglia; Laura Molin; Katherine Williams; Chiara Cosma; Rachele Reitano; Annalisa Sechi; Eugenio Ragazzi; Pietro Traldi
Journal:  J Mass Spectrom       Date:  2009-03       Impact factor: 1.982
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  20 in total

Review 1.  Proteomic analysis of acute kidney injury: biomarkers to mechanisms.

Authors:  Michael R Bennett; Prasad Devarajan
Journal:  Proteomics Clin Appl       Date:  2010-12-06       Impact factor: 3.494

2.  Site-specific characterization of N-linked glycosylation in human urinary glycoproteins and endogenous glycopeptides.

Authors:  Rebeca Kawahara; Joyce Saad; Claudia Blanes Angeli; Giuseppe Palmisano
Journal:  Glycoconj J       Date:  2016-05-27       Impact factor: 2.916

3.  SWATH-MS Protocols in Human Diseases.

Authors:  Maria Del Pilar Chantada-Vázquez; María García Vence; Antonio Serna; Cristina Núñez; Susana B Bravo
Journal:  Methods Mol Biol       Date:  2021

Review 4.  Novel techniques and newer markers for the evaluation of "proximal tubular dysfunction".

Authors:  Michael Ludwig; Sidharth K Sethi
Journal:  Int Urol Nephrol       Date:  2011-03-01       Impact factor: 2.370

5.  Proteomic candidate biomarkers of drug-induced nephrotoxicity in the rat.

Authors:  Rodney Rouse; Justyna Siwy; William Mullen; Harald Mischak; Jochen Metzger; Joseph Hanig
Journal:  PLoS One       Date:  2012-04-11       Impact factor: 3.240

6.  Advancing Urinary Protein Biomarker Discovery by Data-Independent Acquisition on a Quadrupole-Orbitrap Mass Spectrometer.

Authors:  Jan Muntel; Yue Xuan; Sebastian T Berger; Lukas Reiter; Richard Bachur; Alex Kentsis; Hanno Steen
Journal:  J Proteome Res       Date:  2015-10-22       Impact factor: 4.466

Review 7.  [Urinary proteomics: the diagnostic key for urinary tract abnormalities and kidney diseases in children?].

Authors:  J H H Ehrich; E Schiffer; J Drube
Journal:  Urologe A       Date:  2011-02       Impact factor: 0.639

8.  Collagen Type III and VI Remodeling Biomarkers Are Associated with Kidney Fibrosis in Lupus Nephritis.

Authors:  Federica Genovese; Ahmad Akhgar; Sung Sam Lim; Alton B Farris; Monica Battle; Jason Cobb; Dominic Sinibaldi; Morten A Karsdal; Wendy I White
Journal:  Kidney360       Date:  2021-06-18

Review 9.  Biomarkers in nephrology: Core Curriculum 2013.

Authors:  Gearoid M McMahon; Sushrut S Waikar
Journal:  Am J Kidney Dis       Date:  2013-02-27       Impact factor: 8.860

10.  Integrated Kidney Exosome Analysis for the Detection of Kidney Transplant Rejection.

Authors:  Jongmin Park; Hsing-Ying Lin; Jean Pierre Assaker; Sangmoo Jeong; Chen-Han Huang; A Kurdi; Kyungheon Lee; Kyle Fraser; Changwook Min; Siawosh Eskandari; Sujit Routray; Bakhos Tannous; Reza Abdi; Leonardo Riella; Anil Chandraker; Cesar M Castro; Ralph Weissleder; Hakho Lee; Jamil R Azzi
Journal:  ACS Nano       Date:  2017-10-25       Impact factor: 15.881
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