Literature DB >> 20348262

Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6.

Hiroyuki Arai1, Haruna Kanbe, Masaharu Ishii, Yasuo Igarashi.   

Abstract

Hydrogenobacter thermophilus is a thermophilic, obligately chemolithoautotrophic and aerobic hydrogen-oxidizing bacterium. It is unique in its ability to fix carbon dioxide via the reductive tricarboxylic acid cycle under aerobic conditions. It utilizes molecular hydrogen, elemental sulfur, or thiosulfate as the sole energy source. Here, we report the complete genome sequence of H. thermophilus TK-6.

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Year:  2010        PMID： 20348262      PMCID： PMC2863560          DOI： 10.1128/JB.00158-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  A phylogenetic analysis of Aquifex pyrophilus.

Authors:  S Burggraf; G J Olsen; K O Stetter; C R Woese
Journal:  Syst Appl Microbiol       Date:  1992-08       Impact factor: 4.022

2.  Nitrate respiratory metabolism in an obligately autotrophic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus TK-6.

Authors:  M Suzuki; Z J Cui; M Ishii; Y Igarashi
Journal:  Arch Microbiol       Date:  2001-01       Impact factor: 2.552

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Chemical structure of a novel aminophospholipid from Hydrogenobacter thermophilus strain TK-6.

Authors:  J Yoshino; Y Sugiyama; S Sakuda; T Kodama; H Nagasawa; M Ishii; Y Igarashi
Journal:  J Bacteriol       Date:  2001-11       Impact factor: 3.490

6.  CRITICA: coding region identification tool invoking comparative analysis.

Authors:  J H Badger; G J Olsen
Journal:  Mol Biol Evol       Date:  1999-04       Impact factor: 16.240

7.  The complete genome of the hyperthermophilic bacterium Aquifex aeolicus.

Authors:  G Deckert; P V Warren; T Gaasterland; W G Young; A L Lenox; D E Graham; R Overbeek; M A Snead; M Keller; M Aujay; R Huber; R A Feldman; J M Short; G J Olsen; R V Swanson
Journal:  Nature       Date:  1998-03-26       Impact factor: 49.962

8.  Complete and draft genome sequences of six members of the Aquificales.

Authors:  Anna-Louise Reysenbach; N Hamamura; M Podar; E Griffiths; S Ferreira; R Hochstein; J Heidelberg; J Johnson; D Mead; A Pohorille; M Sarmiento; K Schweighofer; R Seshadri; M A Voytek
Journal:  J Bacteriol       Date:  2009-01-09       Impact factor: 3.490

9.  2-Methylthio-1,4-naphthoquinone, a unique sulfur-containing quinone from a thermophilic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus.

Authors:  M Ishii; T Kawasumi; Y Igarashi; T Kodama; Y Minoda
Journal:  J Bacteriol       Date:  1987-06       Impact factor: 3.490

10.  Phylogenetic position of the genus Hydrogenobacter.

Authors:  C Pitulle; Y Yang; M Marchiani; E R Moore; J L Siefert; M Aragno; P Jurtshuk; G E Fox
Journal:  Int J Syst Bacteriol       Date:  1994-10
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  9 in total

1.  Rapid and accurate identification of human-associated staphylococci by use of multiplex PCR.

Authors:  Shintaro Hirotaki; Takashi Sasaki; Kyoko Kuwahara-Arai; Keiichi Hiramatsu
Journal:  J Clin Microbiol       Date:  2011-08-10       Impact factor: 5.948

2.  Discovery and analysis of cofactor-dependent phosphoglycerate mutase homologs as novel phosphoserine phosphatases in Hydrogenobacter thermophilus.

Authors:  Yoko Chiba; Kenro Oshima; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  J Biol Chem       Date:  2012-02-15       Impact factor: 5.157

3.  Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans.

Authors:  Donato Giovannelli; Stefan M Sievert; Michael Hügler; Stephanie Markert; Dörte Becher; Thomas Schweder; Costantino Vetriani
Journal:  Elife       Date:  2017-04-24       Impact factor: 8.140

4.  The Arnon-Buchanan cycle: a retrospective, 1966-2016.

Authors:  Bob B Buchanan; Reidun Sirevåg; Georg Fuchs; Ruslan N Ivanovsky; Yasuo Igarashi; Masaharu Ishii; F Robert Tabita; Ivan A Berg
Journal:  Photosynth Res       Date:  2017-10-10       Impact factor: 3.573

5.  Coordinating environmental genomics and geochemistry reveals metabolic transitions in a hot spring ecosystem.

Authors:  Wesley D Swingley; D'Arcy R Meyer-Dombard; Everett L Shock; Eric B Alsop; Heinz D Falenski; Jeff R Havig; Jason Raymond
Journal:  PLoS One       Date:  2012-06-04       Impact factor: 3.240

6.  Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent.

Authors:  Markus Göker; Hajnalka Daligault; Romano Mwirichia; Alla Lapidus; Susan Lucas; Shweta Deshpande; Ioanna Pagani; Roxanne Tapia; Jan-Fang Cheng; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Cliff Han; Miriam Land; Loren Hauser; Chongle Pan; Evelyne-Marie Brambilla; Manfred Rohde; Stefan Spring; Johannes Sikorski; Reinhard Wirth; John C Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2011-12-30

7.  Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).

Authors:  Ahmet Zeytun; Johannes Sikorski; Matt Nolan; Alla Lapidus; Susan Lucas; James Han; Hope Tice; Jan-Fang Cheng; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Olivier D Ngatchou-Djao; Miriam Land; Loren Hauser; Cynthia D Jeffries; Cliff Han; John C Detter; Susanne Ubler; Manfred Rohde; Brian J Tindall; Markus Göker; Reinhard Wirth; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Stand Genomic Sci       Date:  2011-04-29

8.  A novel enzymatic system against oxidative stress in the thermophilic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus.

Authors:  Yuya Sato; Masafumi Kameya; Shinya Fushinobu; Takayoshi Wakagi; Hiroyuki Arai; Masaharu Ishii; Yasuo Igarashi
Journal:  PLoS One       Date:  2012-04-02       Impact factor: 3.240

9.  Phylogenetic position of aquificales based on the whole genome sequences of six aquificales species.

Authors:  Kenro Oshima; Yoko Chiba; Yasuo Igarashi; Hiroyuki Arai; Masaharu Ishii
Journal:  Int J Evol Biol       Date:  2012-07-12
  9 in total

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