Literature DB >> 19136599

Complete and draft genome sequences of six members of the Aquificales.

Anna-Louise Reysenbach1, N Hamamura, M Podar, E Griffiths, S Ferreira, R Hochstein, J Heidelberg, J Johnson, D Mead, A Pohorille, M Sarmiento, K Schweighofer, R Seshadri, M A Voytek.   

Abstract

The Aquificales are widespread in marine and terrestrial hydrothermal environments. Here, we report the complete and draft genome sequences of six new members of the Aquificales: two marine species, Persephonella marina strain EX-H1 and Hydrogenivirga strain 128-5-R1 (from the East Pacific Rise, 9 degrees 50.3'N, 104 degrees 17.5'W, and the Eastern Lau Spreading Center, 176 degrees 11.5'W, 20 degrees 45.8'S, respectively), and four terrestrial isolates, Sulfurihydrogenibium azorense strain Az-Fu1, Sulfurihydrogenibium yellowstonense strain SS-5, and Sulfurihydrogenibium strain Y03AOP1 (from Furnas, Azores, Portugal, and Calcite Springs and Obsidian Pool in Yellowstone National Park, United States, respectively), and the only thermoacidophilic isolate, Hydrogenobaculum strain Y04AAS1 (from a stream adjacent to Obsidian Pool). Significant differences among the different species exist that include nitrogen metabolism, hydrogen utilization, chemotaxis, and signal transduction, providing insights into their ecological niche adaptations.

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Year:  2009        PMID: 19136599      PMCID: PMC2648382          DOI: 10.1128/JB.01645-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  9 in total

1.  The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

Authors:  John F Heidelberg; Rekha Seshadri; Shelley A Haveman; Christopher L Hemme; Ian T Paulsen; James F Kolonay; Jonathan A Eisen; Naomi Ward; Barbara Methe; Lauren M Brinkac; Sean C Daugherty; Robert T Deboy; Robert J Dodson; A Scott Durkin; Ramana Madupu; William C Nelson; Steven A Sullivan; Derrick Fouts; Daniel H Haft; Jeremy Selengut; Jeremy D Peterson; Tanja M Davidsen; Nikhat Zafar; Liwei Zhou; Diana Radune; George Dimitrov; Mark Hance; Kevin Tran; Hoda Khouri; John Gill; Terry R Utterback; Tamara V Feldblyum; Judy D Wall; Gerrit Voordouw; Claire M Fraser
Journal:  Nat Biotechnol       Date:  2004-04-11       Impact factor: 54.908

2.  A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.

Authors:  Susanne M D Goldberg; Justin Johnson; Dana Busam; Tamara Feldblyum; Steve Ferriera; Robert Friedman; Aaron Halpern; Hoda Khouri; Saul A Kravitz; Federico M Lauro; Kelvin Li; Yu-Hui Rogers; Robert Strausberg; Granger Sutton; Luke Tallon; Torsten Thomas; Eli Venter; Marvin Frazier; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-13       Impact factor: 11.205

3.  Autotrophic CO2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage.

Authors:  Michael Hügler; Harald Huber; Stephen J Molyneaux; Costantino Vetriani; Stefan M Sievert
Journal:  Environ Microbiol       Date:  2007-01       Impact factor: 5.491

4.  Hydrogen metabolism in the hyperthermophilic bacterium Aquifex aeolicus.

Authors:  M Guiral; C Aubert; M-T Giudici-Orticoni
Journal:  Biochem Soc Trans       Date:  2005-02       Impact factor: 5.407

5.  Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfur-oxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense.

Authors:  S Nakagawa; Z Shtaih; A Banta; T J Beveridge; Y Sako; A-L Reysenbach
Journal:  Int J Syst Evol Microbiol       Date:  2005-11       Impact factor: 2.747

6.  The complete genome of the hyperthermophilic bacterium Aquifex aeolicus.

Authors:  G Deckert; P V Warren; T Gaasterland; W G Young; A L Lenox; D E Graham; R Overbeek; M A Snead; M Keller; M Aujay; R Huber; R A Feldman; J M Short; G J Olsen; R V Swanson
Journal:  Nature       Date:  1998-03-26       Impact factor: 49.962

7.  Persephonella marina gen. nov., sp. nov. and Persephonella guaymasensis sp. nov., two novel, thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents.

Authors:  D Götz; A Banta; T J Beveridge; A I Rushdi; B R T Simoneit; A L Reysenbach
Journal:  Int J Syst Evol Microbiol       Date:  2002-07       Impact factor: 2.747

8.  Sulfurihydrogenibium azorense, sp. nov., a thermophilic hydrogen-oxidizing microaerophile from terrestrial hot springs in the Azores.

Authors:  P Aguiar; T J Beveridge; A-L Reysenbach
Journal:  Int J Syst Evol Microbiol       Date:  2004-01       Impact factor: 2.747

9.  The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.

Authors:  Victor M Markowitz; Ernest Szeto; Krishna Palaniappan; Yuri Grechkin; Ken Chu; I-Min A Chen; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia N Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2007-10-12       Impact factor: 16.971

  9 in total
  33 in total

1.  Mercury resistance and mercuric reductase activities and expression among chemotrophic thermophilic Aquificae.

Authors:  Zachary Freedman; Chengsheng Zhu; Tamar Barkay
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

2.  Rapid and accurate identification of human-associated staphylococci by use of multiplex PCR.

Authors:  Shintaro Hirotaki; Takashi Sasaki; Kyoko Kuwahara-Arai; Keiichi Hiramatsu
Journal:  J Clin Microbiol       Date:  2011-08-10       Impact factor: 5.948

3.  Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6.

Authors:  Hiroyuki Arai; Haruna Kanbe; Masaharu Ishii; Yasuo Igarashi
Journal:  J Bacteriol       Date:  2010-03-26       Impact factor: 3.490

4.  Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park.

Authors:  Christine Romano; Seth D'Imperio; Tanja Woyke; Konstantinos Mavromatis; Roger Lasken; Everett L Shock; Timothy R McDermott
Journal:  Appl Environ Microbiol       Date:  2013-02-22       Impact factor: 4.792

5.  Dissemination of 6S RNA among bacteria.

Authors:  Stefanie Wehner; Katrin Damm; Roland K Hartmann; Manja Marz
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

6.  Differential gene expression in Ulva prolifera under low light and low temperature conditions.

Authors:  Youxun Li; Xiaowen Zhang; Dong Xu; Zhimeng Zhuang; Naihao Ye
Journal:  Curr Genet       Date:  2012-07-24       Impact factor: 3.886

7.  Characterization of N-linked protein glycosylation in Helicobacter pullorum.

Authors:  Adrian J Jervis; Rebecca Langdon; Paul Hitchen; Andrew J Lawson; Alison Wood; Joanne L Fothergill; Howard R Morris; Anne Dell; Brendan Wren; Dennis Linton
Journal:  J Bacteriol       Date:  2010-06-25       Impact factor: 3.490

8.  Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans.

Authors:  Donato Giovannelli; Stefan M Sievert; Michael Hügler; Stephanie Markert; Dörte Becher; Thomas Schweder; Costantino Vetriani
Journal:  Elife       Date:  2017-04-24       Impact factor: 8.140

9.  Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1.

Authors:  Yoshihiro Takaki; Shigeru Shimamura; Satoshi Nakagawa; Yasuo Fukuhara; Hiroshi Horikawa; Akiho Ankai; Takeshi Harada; Akira Hosoyama; Akio Oguchi; Shigehiro Fukui; Nobuyuki Fujita; Hideto Takami; Ken Takai
Journal:  DNA Res       Date:  2010-02-26       Impact factor: 4.458

10.  Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.

Authors:  William P Inskeep; Douglas B Rusch; Zackary J Jay; Markus J Herrgard; Mark A Kozubal; Toby H Richardson; Richard E Macur; Natsuko Hamamura; Ryan deM Jennings; Bruce W Fouke; Anna-Louise Reysenbach; Frank Roberto; Mark Young; Ariel Schwartz; Eric S Boyd; Jonathan H Badger; Eric J Mathur; Alice C Ortmann; Mary Bateson; Gill Geesey; Marvin Frazier
Journal:  PLoS One       Date:  2010-03-19       Impact factor: 3.240

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