Literature DB >> 20332257

Molecular pathology in epidemiologic studies: a primer on key considerations.

Mark E Sherman1, Will Howatt, Fiona M Blows, Paul Pharoah, Stephen M Hewitt, Montserrat Garcia-Closas.   

Abstract

The development of molecular pathologic components in epidemiologic studies offers opportunities to relate etiologic factors to specific tumor types, which in turn may allow the development of better overall risk prediction and provide clues about mechanisms that mediate risk factors. In addition, this research may help identify or validate tissue biomarkers related to prognosis and prediction of treatment responses. In this mini review, we highlight specific considerations related to the incorporation of pathology in epidemiologic studies, using breast cancer research as a model. Issues related to ensuring the representativeness of cases for which research tissue is available and understanding limitations resulting from variable procedures for tissue collection, fixation, and processing are discussed. The growing importance of molecular pathology in clinical medicine has led to increased emphasis on optimized tissue preparation, which should enhance this type of research. In addition, the availability of new technologies including tissue microarrays, image scanning, and automated analysis to achieve high-throughput standardized assessment of immunohistochemical markers, and potentially other assays, is enabling consistent scoring of a growing list of markers in large studies. Concurrently, methodologic research to extend the range of assays that can be done on fixed tissues is expanding possibilities for molecular pathologic studies in epidemiologic research.

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Year:  2010        PMID: 20332257      PMCID: PMC2852464          DOI: 10.1158/1055-9965.EPI-10-0056

Source DB:  PubMed          Journal:  Cancer Epidemiol Biomarkers Prev        ISSN: 1055-9965            Impact factor:   4.254


  40 in total

Review 1.  The application of tissue microarrays in the validation of microarray results.

Authors:  Stephen M Hewitt
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

Review 2.  Diagnostic breast MR imaging: current status and future directions.

Authors:  Elizabeth A Morris
Journal:  Radiol Clin North Am       Date:  2007-09       Impact factor: 2.303

Review 3.  Special symposium: fixation and tissue processing models.

Authors:  W E Grizzle
Journal:  Biotech Histochem       Date:  2009-10       Impact factor: 1.718

4.  Quantitative analysis of estrogen receptor heterogeneity in breast cancer.

Authors:  Gina G Chung; Maciej P Zerkowski; Sriparna Ghosh; Robert L Camp; David L Rimm
Journal:  Lab Invest       Date:  2007-03-05       Impact factor: 5.662

5.  Robust global micro-RNA profiling with formalin-fixed paraffin-embedded breast cancer tissues.

Authors:  Angela B Y Hui; Wei Shi; Paul C Boutros; Naomi Miller; Melania Pintilie; Tony Fyles; David McCready; Derek Wong; Kate Gerster; Levi Waldron; Igor Jurisica; Linda Z Penn; Fei-Fei Liu
Journal:  Lab Invest       Date:  2009-03-16       Impact factor: 5.662

6.  Variation in breast cancer hormone receptor and HER2 levels by etiologic factors: a population-based analysis.

Authors:  Mark E Sherman; David L Rimm; Xiaohong R Yang; Nilanjan Chatterjee; Louise A Brinton; Jolanta Lissowska; Beata Peplonska; Neonila Szeszenia-Dabrowska; Witold Zatonski; Richard Cartun; Daniza Mandich; Grzegorz Rymkiewicz; Marcin Ligaj; Stanisław Lukaszek; Radzislaw Kordek; Zynep Kalaylioglu; Malini Harigopal; Lori Charrette; Roni T Falk; Douglas Richesson; William F Anderson; Stephen M Hewitt; Montserrat García-Closas
Journal:  Int J Cancer       Date:  2007-09-01       Impact factor: 7.396

Review 7.  Mammographic density: a heritable risk factor for breast cancer.

Authors:  Norman F Boyd; Lisa J Martin; Johanna M Rommens; Andrew D Paterson; Salomon Minkin; Martin J Yaffe; Jennifer Stone; John L Hopper
Journal:  Methods Mol Biol       Date:  2009

8.  Loss of antigenicity in stored sections of breast cancer tissue microarrays.

Authors:  Jennifer H Fergenbaum; Montserrat Garcia-Closas; Stephen M Hewitt; Jolanta Lissowska; Lori C Sakoda; Mark E Sherman
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2004-04       Impact factor: 4.254

9.  To excise or to sample the mammographic target: what is the goal of stereotactic 11-gauge vacuum-assisted breast biopsy?

Authors:  Laura Liberman; Jennifer B Kaplan; Elizabeth A Morris; Andrea F Abramson; Jennifer H Menell; D David Dershaw
Journal:  AJR Am J Roentgenol       Date:  2002-09       Impact factor: 3.959

10.  3'-end sequencing for expression quantification (3SEQ) from archival tumor samples.

Authors:  Andrew H Beck; Ziming Weng; Daniela M Witten; Shirley Zhu; Joseph W Foley; Phil Lacroute; Cheryl L Smith; Robert Tibshirani; Matt van de Rijn; Arend Sidow; Robert B West
Journal:  PLoS One       Date:  2010-01-19       Impact factor: 3.240

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  17 in total

1.  Pathology of breast and ovarian cancers among BRCA1 and BRCA2 mutation carriers: results from the Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA).

Authors:  Nasim Mavaddat; Daniel Barrowdale; Irene L Andrulis; Susan M Domchek; Diana Eccles; Heli Nevanlinna; Susan J Ramus; Amanda Spurdle; Mark Robson; Mark Sherman; Anna Marie Mulligan; Fergus J Couch; Christoph Engel; Lesley McGuffog; Sue Healey; Olga M Sinilnikova; Melissa C Southey; Mary Beth Terry; David Goldgar; Frances O'Malley; Esther M John; Ramunas Janavicius; Laima Tihomirova; Thomas V O Hansen; Finn C Nielsen; Ana Osorio; Alexandra Stavropoulou; Javier Benítez; Siranoush Manoukian; Bernard Peissel; Monica Barile; Sara Volorio; Barbara Pasini; Riccardo Dolcetti; Anna Laura Putignano; Laura Ottini; Paolo Radice; Ute Hamann; Muhammad U Rashid; Frans B Hogervorst; Mieke Kriege; Rob B van der Luijt; Susan Peock; Debra Frost; D Gareth Evans; Carole Brewer; Lisa Walker; Mark T Rogers; Lucy E Side; Catherine Houghton; JoEllen Weaver; Andrew K Godwin; Rita K Schmutzler; Barbara Wappenschmidt; Alfons Meindl; Karin Kast; Norbert Arnold; Dieter Niederacher; Christian Sutter; Helmut Deissler; Doroteha Gadzicki; Sabine Preisler-Adams; Raymonda Varon-Mateeva; Ines Schönbuchner; Heidrun Gevensleben; Dominique Stoppa-Lyonnet; Muriel Belotti; Laure Barjhoux; Claudine Isaacs; Beth N Peshkin; Trinidad Caldes; Miguel de la Hoya; Carmen Cañadas; Tuomas Heikkinen; Päivi Heikkilä; Kristiina Aittomäki; Ignacio Blanco; Conxi Lazaro; Joan Brunet; Bjarni A Agnarsson; Adalgeir Arason; Rosa B Barkardottir; Martine Dumont; Jacques Simard; Marco Montagna; Simona Agata; Emma D'Andrea; Max Yan; Stephen Fox; Timothy R Rebbeck; Wendy Rubinstein; Nadine Tung; Judy E Garber; Xianshu Wang; Zachary Fredericksen; Vernon S Pankratz; Noralane M Lindor; Csilla Szabo; Kenneth Offit; Rita Sakr; Mia M Gaudet; Christian F Singer; Muy-Kheng Tea; Christine Rappaport; Phuong L Mai; Mark H Greene; Anna Sokolenko; Evgeny Imyanitov; Amanda Ewart Toland; Leigha Senter; Kevin Sweet; Mads Thomassen; Anne-Marie Gerdes; Torben Kruse; Maria Caligo; Paolo Aretini; Johanna Rantala; Anna von Wachenfeld; Karin Henriksson; Linda Steele; Susan L Neuhausen; Robert Nussbaum; Mary Beattie; Kunle Odunsi; Lara Sucheston; Simon A Gayther; Kate Nathanson; Jenny Gross; Christine Walsh; Beth Karlan; Georgia Chenevix-Trench; Douglas F Easton; Antonis C Antoniou
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2011-12-05       Impact factor: 4.254

Review 2.  Molecular pathological epidemiology of colorectal neoplasia: an emerging transdisciplinary and interdisciplinary field.

Authors:  Shuji Ogino; Andrew T Chan; Charles S Fuchs; Edward Giovannucci
Journal:  Gut       Date:  2010-10-29       Impact factor: 23.059

3.  Biospecimens and biorepositories: from afterthought to science.

Authors:  Jimmie B Vaught; Marianne K Henderson; Carolyn C Compton
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2012-02       Impact factor: 4.254

4.  The Prostate, Lung, Colorectal and Ovarian Cancer (PLCO) Screening Trial Pathology Tissue Resource.

Authors:  Claire S Zhu; Wen-Yi Huang; Paul F Pinsky; Christine D Berg; Mark Sherman; Kelly J Yu; Danielle M Carrick; Amanda Black; Robert Hoover; Petra Lenz; Craig Williams; Laura Hawkins; Matthew Chaloux; Susan Yurgalevitch; Sunitha Mathew; Amy Miller; Vanessa Olivo; Asia Khan; Shannon M Pretzel; Deborah Multerer; Patricia Beckmann; Karen G Broski; Neal D Freedman
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2016-09-15       Impact factor: 4.254

Review 5.  Cancer immunology--analysis of host and tumor factors for personalized medicine.

Authors:  Shuji Ogino; Jérôme Galon; Charles S Fuchs; Glenn Dranoff
Journal:  Nat Rev Clin Oncol       Date:  2011-08-09       Impact factor: 66.675

6.  Interdisciplinary education to integrate pathology and epidemiology: towards molecular and population-level health science.

Authors:  Shuji Ogino; Emily E King; Andrew H Beck; Mark E Sherman; Danny A Milner; Edward Giovannucci
Journal:  Am J Epidemiol       Date:  2012-08-30       Impact factor: 4.897

7.  Feasibility of linking population-based cancer registries and cancer center biorepositories.

Authors:  Margaret E McCusker; Rosemary D Cress; Mark Allen; Allyn Fernandez-Ami; Regina Gandour-Edwards
Journal:  Biopreserv Biobank       Date:  2012-10       Impact factor: 2.300

8.  Risk factors by molecular subtypes of breast cancer across a population-based study of women 56 years or younger.

Authors:  Mia M Gaudet; Michael F Press; Robert W Haile; Charles F Lynch; Sally L Glaser; Joellen Schildkraut; Marilie D Gammon; W Douglas Thompson; Jonine L Bernstein
Journal:  Breast Cancer Res Treat       Date:  2011-06-11       Impact factor: 4.872

Review 9.  Considerations for Pharmacoepidemiological Studies of Drug-Cancer Associations.

Authors:  Anton Pottegård; Søren Friis; Til Stürmer; Jesper Hallas; Shahram Bahmanyar
Journal:  Basic Clin Pharmacol Toxicol       Date:  2018-01-15       Impact factor: 4.080

Review 10.  Integration of molecular pathology, epidemiology and social science for global precision medicine.

Authors:  Akihiro Nishi; Danny A Milner; Edward L Giovannucci; Reiko Nishihara; Andy S Tan; Ichiro Kawachi; Shuji Ogino
Journal:  Expert Rev Mol Diagn       Date:  2015-12-04       Impact factor: 5.225

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