Literature DB >> 16938563

The application of tissue microarrays in the validation of microarray results.

Stephen M Hewitt1.   

Abstract

Microarray experiments produce a large volume of data that require validation. The validation of these experiments can be carried out in many fashions. In the reduction to clinical utility, the use of tissue microarrays has become a common tool to both validate and generalize the results of microarray experiments. A tissue microarray is a collection of tissue specimens presented on a glass slide in a grid layout. Tissue microarrays contain between tens and hundreds of samples allowing the generalization of microarray findings to a large number of samples. Tissue microarrays can be used for in situ hybridization and immunohistochemical analysis, confirming the results of microarray experiments at both the transcriptional and the proteomic level. This chapter reviews the theory and application of tissue microarrays in the validation of microarray experiments.

Mesh:

Year:  2006        PMID: 16938563     DOI: 10.1016/S0076-6879(06)10020-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  18 in total

1.  Simultaneous recovery of DNA and RNA from formalin-fixed paraffin-embedded tissue and application in epidemiologic studies.

Authors:  Wen-Yi Huang; Timothy M Sheehy; Lee E Moore; Ann W Hsing; Mark P Purdue
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2010-03-23       Impact factor: 4.254

2.  Aldehyde dehydrogenase 3B1 (ALDH3B1): immunohistochemical tissue distribution and cellular-specific localization in normal and cancerous human tissues.

Authors:  Satori A Marchitti; David J Orlicky; Chad Brocker; Vasilis Vasiliou
Journal:  J Histochem Cytochem       Date:  2010-09       Impact factor: 2.479

Review 3.  Virtual microscopy as an enabler of automated/quantitative assessment of protein expression in TMAs.

Authors:  Catherine Conway; Lynne Dobson; Anthony O'Grady; Elaine Kay; Sean Costello; Daniel O'Shea
Journal:  Histochem Cell Biol       Date:  2008-08-05       Impact factor: 4.304

4.  Cell and tissue microarray technologies for protein and nucleic acid expression profiling.

Authors:  Marina Cardano; Giuseppe R Diaferia; Maurizio Falavigna; Chiara C Spinelli; Fausto Sessa; Pasquale DeBlasio; Ida Biunno
Journal:  J Histochem Cytochem       Date:  2012-11-19       Impact factor: 2.479

Review 5.  Histo-proteomic profiling of formalin-fixed, paraffin-embedded tissue.

Authors:  Kant M Matsuda; Joon-Yong Chung; Stephen M Hewitt
Journal:  Expert Rev Proteomics       Date:  2010-04       Impact factor: 3.940

6.  Racial Differences in the Association Between Luminal Master Regulator Gene Expression Levels and Breast Cancer Survival.

Authors:  Jung S Byun; Sandeep K Singhal; Samson Park; Dae Ik Yi; Tingfen Yan; Ambar Caban; Alana Jones; Partha Mukhopadhyay; Sara M Gil; Stephen M Hewitt; Lisa Newman; Melissa B Davis; Brittany D Jenkins; Jorge L Sepulveda; Adriana De Siervi; Anna María Nápoles; Nasreen A Vohra; Kevin Gardner
Journal:  Clin Cancer Res       Date:  2020-01-07       Impact factor: 12.531

7.  Global histone H4 acetylation and HDAC2 expression in colon adenoma and carcinoma.

Authors:  Hassan Ashktorab; Kevin Belgrave; Fatemeh Hosseinkhah; Hassan Brim; Mehdi Nouraie; Mikiko Takkikto; Steve Hewitt; Edward L Lee; R H Dashwood; Duane Smoot
Journal:  Dig Dis Sci       Date:  2008-12-05       Impact factor: 3.199

Review 8.  Tissue microarrays as a tool in the discovery and validation of tumor markers.

Authors:  Stephen M Hewitt
Journal:  Methods Mol Biol       Date:  2009

9.  Ammosamides A and B target myosin.

Authors:  Chambers C Hughes; John B MacMillan; Susana P Gaudêncio; William Fenical; James J La Clair
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

10.  Distinct high-profile methylated genes in colorectal cancer.

Authors:  Pooneh Mokarram; Krishan Kumar; Hassan Brim; Fakhraddin Naghibalhossaini; Mehdi Saberi-firoozi; Mehdi Nouraie; Robert Green; Ed Lee; Duane T Smoot; Hassan Ashktorab
Journal:  PLoS One       Date:  2009-09-11       Impact factor: 3.240

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