Literature DB >> 20307684

Cascades of transcription regulation during liver regeneration.

Svitlana Kurinna1, Michelle Craig Barton.   

Abstract

An increasing demand for new strategies in cancer prevention and regenerative medicine requires a better understanding of molecular mechanisms that control cell proliferation in tissue-specific manner. Regenerating liver is a unique model allowing use of biochemical, genetic, and engineering tools to uncover molecular mechanisms and improve treatment of hepatic cancers, liver failure, and fibrotic disease. Molecular mechanisms of liver regeneration involve extra- and intracellular factors to activate transcription of genes normally silenced in quiescent liver. While many upstream signaling pathways of the regenerating liver have been extensively studied, our knowledge of the downstream effectors, transcription factors (TFs), remains limited. This review describes consecutive engagement of pre-existing and de novo synthesized TFs, as cascades that regulate expression of growth-related and metabolic genes during liver regeneration after partial hepatectomy in mice. Several previously recognized regulators of regenerating liver are described in the light of recently identified co-activator and co-repressor complexes that interact with primary DNA-binding TFs. Published results of gene expression and chromatin immunoprecipitation analyses, as well as studies of transgenic mouse models, are used to emphasize new potential regulators of transcription during liver regeneration. Finally, a more detailed description of newly identified transcriptional regulators of liver regeneration illustrates the tightly regulated balance of proliferative and metabolic responses to partial hepatectomy.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20307684      PMCID: PMC2923255          DOI: 10.1016/j.biocel.2010.03.013

Source DB:  PubMed          Journal:  Int J Biochem Cell Biol        ISSN: 1357-2725            Impact factor:   5.085


  108 in total

1.  Liver growth in the embryo and during liver regeneration in zebrafish requires the cell cycle regulator, uhrf1.

Authors:  Kirsten C Sadler; Katherine N Krahn; Naseem A Gaur; Chinweike Ukomadu
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-22       Impact factor: 11.205

2.  The role of integrin-linked kinase in liver wound healing.

Authors:  Mahnoush S Shafiei; Don C Rockey
Journal:  J Biol Chem       Date:  2006-05-24       Impact factor: 5.157

3.  Senescence and tumour clearance is triggered by p53 restoration in murine liver carcinomas.

Authors:  Wen Xue; Lars Zender; Cornelius Miething; Ross A Dickins; Eva Hernando; Valery Krizhanovsky; Carlos Cordon-Cardo; Scott W Lowe
Journal:  Nature       Date:  2007-01-24       Impact factor: 49.962

4.  Id2 leaves the chromatin of the E2F4-p130-controlled c-myc promoter during hepatocyte priming for liver regeneration.

Authors:  José L Rodríguez; Juan Sandoval; Gaetano Serviddio; Juan Sastre; María Morante; Maria-Giulia Perrelli; María L Martínez-Chantar; José Viña; Juan R Viña; José M Mato; Matías A Avila; Luis Franco; Gerardo López-Rodas; Luis Torres
Journal:  Biochem J       Date:  2006-09-15       Impact factor: 3.857

Review 5.  An emerging role for Ca2+/calcineurin/NFAT signaling in cancerogenesis.

Authors:  Malte Buchholz; Volker Ellenrieder
Journal:  Cell Cycle       Date:  2007-01-27       Impact factor: 4.534

6.  Expression pattern and action analysis of genes associated with the responses to chemical stimuli during rat liver regeneration.

Authors:  Shao-Wei Qin; Li-Feng Zhao; Xiao-Guang Chen; Cun-Shuan Xu
Journal:  World J Gastroenterol       Date:  2006-12-07       Impact factor: 5.742

Review 7.  Hippo signaling in organ size control.

Authors:  Duojia Pan
Journal:  Genes Dev       Date:  2007-04-15       Impact factor: 11.361

8.  TAp73/Delta Np73 influences apoptotic response, chemosensitivity and prognosis in hepatocellular carcinoma.

Authors:  M Müller; T Schilling; A E Sayan; A Kairat; K Lorenz; H Schulze-Bergkamen; M Oren; A Koch; A Tannapfel; W Stremmel; G Melino; P H Krammer
Journal:  Cell Death Differ       Date:  2005-09-30       Impact factor: 15.828

Review 9.  DNA damage checkpoints: from initiation to recovery or adaptation.

Authors:  Jiri Bartek; Jiri Lukas
Journal:  Curr Opin Cell Biol       Date:  2007-02-15       Impact factor: 8.382

10.  Cell cycle effects resulting from inhibition of hepatocyte growth factor and its receptor c-Met in regenerating rat livers by RNA interference.

Authors:  Shirish Paranjpe; William C Bowen; Aaron W Bell; Kari Nejak-Bowen; Jian-Hua Luo; George K Michalopoulos
Journal:  Hepatology       Date:  2007-06       Impact factor: 17.425

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  21 in total

Review 1.  A critical appraisal of the hemodynamic signal driving liver regeneration.

Authors:  Kerstin Abshagen; Christian Eipel; Brigitte Vollmar
Journal:  Langenbecks Arch Surg       Date:  2012-02-07       Impact factor: 3.445

2.  The mouse HP1 proteins are essential for preventing liver tumorigenesis.

Authors:  Nehmé Saksouk; Shefqet Hajdari; Yannick Perez; Marine Pratlong; Célia Barrachina; Céline Graber; Damien Grégoire; Aliki Zavoriti; Amélie Sarrazin; Nelly Pirot; Jean-Yohan Noël; Lakhdar Khellaf; Eric Fabbrizio; Eric Julien; Florence M Cammas
Journal:  Oncogene       Date:  2020-02-04       Impact factor: 9.867

3.  Hepatic retinoid stores are required for normal liver regeneration.

Authors:  Igor O Shmarakov; Hongfeng Jiang; Kryscilla Jian Zhang Yang; Ira J Goldberg; William S Blaner
Journal:  J Lipid Res       Date:  2013-01-23       Impact factor: 5.922

Review 4.  The expanding world of tissue engineering: the building blocks and new applications of tissue engineered constructs.

Authors:  Pinar Zorlutuna; Nihal Engin Vrana; Ali Khademhosseini
Journal:  IEEE Rev Biomed Eng       Date:  2012-12-20

5.  A novel comparative pattern count analysis reveals a chronic ethanol-induced dynamic shift in immediate early NF-κB genome-wide promoter binding during liver regeneration.

Authors:  Lakshmi Kuttippurathu; Biswanath Patra; Jan B Hoek; Rajanikanth Vadigepalli
Journal:  Mol Biosyst       Date:  2016-03

Review 6.  Cell and tissue engineering for liver disease.

Authors:  Sangeeta N Bhatia; Gregory H Underhill; Kenneth S Zaret; Ira J Fox
Journal:  Sci Transl Med       Date:  2014-07-16       Impact factor: 17.956

7.  TSMiner: a novel framework for generating time-specific gene regulatory networks from time-series expression profiles.

Authors:  Mingfei Han; Xian Liu; Wen Zhang; Mengnan Wang; Wenjing Bu; Cheng Chang; Miao Yu; Yingxing Li; Chunyan Tian; Xiaoming Yang; Yunping Zhu; Fuchu He
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

8.  Epigenetic transcriptional regulation of the growth arrest-specific gene 1 (Gas1) in hepatic cell proliferation at mononucleosomal resolution.

Authors:  Natalia Sacilotto; Antonio Espert; Josefa Castillo; Luis Franco; Gerardo López-Rodas
Journal:  PLoS One       Date:  2011-08-09       Impact factor: 3.240

9.  Partial Hepatectomy Induced Long Noncoding RNA Inhibits Hepatocyte Proliferation during Liver Regeneration.

Authors:  Lulu Huang; Sagar S Damle; Sheri Booten; Priyam Singh; Mahyar Sabripour; Jeff Hsu; Minji Jo; Melanie Katz; Andy Watt; Christopher E Hart; Susan M Freier; Brett P Monia; Shuling Guo
Journal:  PLoS One       Date:  2015-07-24       Impact factor: 3.240

10.  Temporal mapping of CEBPA and CEBPB binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries.

Authors:  Janus Schou Jakobsen; Johannes Waage; Nicolas Rapin; Hanne Cathrine Bisgaard; Fin Stolze Larsen; Bo Torben Porse
Journal:  Genome Res       Date:  2013-02-12       Impact factor: 9.043

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