Literature DB >> 20304790

An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants.

Stephen A Smith1, Jeremy M Beaulieu, Michael J Donoghue.   

Abstract

We present molecular dating analyses for land plants that incorporate 33 fossil calibrations, permit rates of molecular evolution to be uncorrelated across the tree, and take into account uncertainties in phylogenetic relationships and the fossil record. We attached a prior probability to each fossil-based minimum age, and explored the effects of relying on the first appearance of tricolpate pollen grains as a lower bound for the age of eudicots. Many of our divergence-time estimates for major clades coincide well with both the known fossil record and with previous estimates. However, our estimates for the origin of crown-clade angiosperms, which center on the Late Triassic, are considerably older than the unequivocal fossil record of flowering plants or than the molecular dates presented in recent studies. Nevertheless, we argue that our older estimates should be taken into account in studying the causes and consequences of the angiosperm radiation in relation to other major events, including the diversification of holometabolous insects. Although the methods used here do help to correct for lineage-specific heterogeneity in rates of molecular evolution (associated, for example, with evolutionary shifts in life history), we remain concerned that some such effects (e.g., the early radiation of herbaceous clades within angiosperms) may still be biasing our inferences.

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Year:  2010        PMID: 20304790      PMCID: PMC2851901          DOI: 10.1073/pnas.1001225107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

1.  Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants.

Authors:  K M Pryer; H Schneider; A R Smith; R Cranfill; P G Wolf; J S Hunt; S D Sipes
Journal:  Nature       Date:  2001-02-01       Impact factor: 49.962

2.  Molecular evidence for the early colonization of land by fungi and plants.

Authors:  D S Heckman; D M Geiser; B R Eidell; R L Stauffer; N L Kardos; S B Hedges
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

3.  Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests.

Authors:  Charles C Davis; Campbell O Webb; Kenneth J Wurdack; Carlos A Jaramillo; Michael J Donoghue
Journal:  Am Nat       Date:  2005-02-01       Impact factor: 3.926

4.  Phylogeny of the ants: diversification in the age of angiosperms.

Authors:  Corrie S Moreau; Charles D Bell; Roger Vila; S Bruce Archibald; Naomi E Pierce
Journal:  Science       Date:  2006-04-07       Impact factor: 47.728

5.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

6.  Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms.

Authors:  Michael J Moore; Charles D Bell; Pamela S Soltis; Douglas E Soltis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

7.  Ancestral xerophobia: a hypothesis on the whole plant ecophysiology of early angiosperms.

Authors:  T S Feild; D S Chatelet; T J Brodribb
Journal:  Geobiology       Date:  2009-02-27       Impact factor: 4.407

8.  Molecular data from 27 proteins do not support a Precambrian origin of land plants.

Authors:  Michael J Sanderson
Journal:  Am J Bot       Date:  2003-06       Impact factor: 3.844

9.  The age of the angiosperms: a molecular timescale without a clock.

Authors:  Charles D Bell; Douglas E Soltis; Pamela S Soltis
Journal:  Evolution       Date:  2005-06       Impact factor: 3.694

10.  A probable pollination mode before angiosperms: Eurasian, long-proboscid scorpionflies.

Authors:  Dong Ren; Conrad C Labandeira; Jorge A Santiago-Blay; Alexandr Rasnitsyn; ChungKun Shih; Alexei Bashkuev; M Amelia V Logan; Carol L Hotton; David Dilcher
Journal:  Science       Date:  2009-11-06       Impact factor: 47.728

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  101 in total

1.  Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae.

Authors:  V Prasad; C A E Strömberg; A D Leaché; B Samant; R Patnaik; L Tang; D M Mohabey; S Ge; A Sahni
Journal:  Nat Commun       Date:  2011-09-20       Impact factor: 14.919

2.  Cytochromes p450.

Authors:  Søren Bak; Fred Beisson; Gerard Bishop; Björn Hamberger; René Höfer; Suzanne Paquette; Danièle Werck-Reichhart
Journal:  Arabidopsis Book       Date:  2011-10-06

3.  The adaptive radiation of lichen-forming Teloschistaceae is associated with sunscreening pigments and a bark-to-rock substrate shift.

Authors:  Ester Gaya; Samantha Fernández-Brime; Reinaldo Vargas; Robert F Lachlan; Cécile Gueidan; Martín Ramírez-Mejía; François Lutzoni
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

4.  Why do leafcutter bees cut leaves? New insights into the early evolution of bees.

Authors:  Jessica R Litman; Bryan N Danforth; Connal D Eardley; Christophe J Praz
Journal:  Proc Biol Sci       Date:  2011-04-13       Impact factor: 5.349

5.  Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins.

Authors:  Patrick M Shih; Nicholas J Matzke
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

6.  Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum.

Authors:  Kevin Vanneste; Lieven Sterck; Alexander Andrew Myburg; Yves Van de Peer; Eshchar Mizrachi
Journal:  Plant Cell       Date:  2015-05-22       Impact factor: 11.277

7.  The Emergence of Earliest Angiosperms may be Earlier than Fossil Evidence Indicates.

Authors:  Karsten Salomo; James F Smith; Taylor S Feild; Marie-Stéphanie Samain; Laura Bond; Christopher Davidson; Jay Zimmers; Christoph Neinhuis; Stefan Wanke
Journal:  Syst Bot       Date:  2017-12-18       Impact factor: 1.101

8.  Massive Tandem Proliferation of ELIPs Supports Convergent Evolution of Desiccation Tolerance across Land Plants.

Authors:  Robert VanBuren; Jeremy Pardo; Ching Man Wai; Sterling Evans; Dorothea Bartels
Journal:  Plant Physiol       Date:  2019-01-02       Impact factor: 8.340

9.  Early cone setting in Picea abies acrocona is associated with increased transcriptional activity of a MADS box transcription factor.

Authors:  Daniel Uddenberg; Johan Reimegård; David Clapham; Curt Almqvist; Sara von Arnold; Olof Emanuelsson; Jens F Sundström
Journal:  Plant Physiol       Date:  2012-12-07       Impact factor: 8.340

10.  Three keys to the radiation of angiosperms into freezing environments.

Authors:  Amy E Zanne; David C Tank; William K Cornwell; Jonathan M Eastman; Stephen A Smith; Richard G FitzJohn; Daniel J McGlinn; Brian C O'Meara; Angela T Moles; Peter B Reich; Dana L Royer; Douglas E Soltis; Peter F Stevens; Mark Westoby; Ian J Wright; Lonnie Aarssen; Robert I Bertin; Andre Calaminus; Rafaël Govaerts; Frank Hemmings; Michelle R Leishman; Jacek Oleksyn; Pamela S Soltis; Nathan G Swenson; Laura Warman; Jeremy M Beaulieu
Journal:  Nature       Date:  2013-12-22       Impact factor: 49.962

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