| Literature DB >> 20233453 |
Young-Tae Ro1, Bo-Kwang Jang, Chan Young Shin, Eui U Park, Chul Geun Kim, Sung-Il Yang.
Abstract
BACKGROUND: Akt regulates various cellular processes, including cell growth, survival, and metabolism. Recently, Akt's role in neurite outgrowth has also emerged. We thus aimed to identify neuronal function-related genes that are regulated by Akt.Entities:
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Year: 2010 PMID: 20233453 PMCID: PMC2844376 DOI: 10.1186/1423-0127-17-18
Source DB: PubMed Journal: J Biomed Sci ISSN: 1021-7770 Impact factor: 8.410
Primers used for semi-quantitative RT-PCR
| Gene | Forward primer | Reverse primer |
|---|---|---|
| Ect2 | 5'-GAGAGCTGGCTGAAGATGCT-3' | 5'-TCCTCTGAGCTATGGGATG-3' |
| Cadm1 | 5'-TCTGGGCCAAACCTGTTCATC AAT-3' | 5'-CTGTGTCTGCGTCTGCTGCGTCAT-3' |
| Rgs4 | 5'-GTTGCTCCCGCTGCCTTTCTCT-3' | 5'-CATGTTCCGGCTTGTCTCCTCTC-3' |
| Cldnd1 | 5'-AACTTGGGATTGTGGAGACG-3' | 5'-CAGAGGTAGGTCCGAAGCAG-3' |
| Kntc2 | 5'-CCAGTTAGCTGTGCAGACCA-3' | 5'-CTTCAGACGTGCATTCCTCA-3' |
| Socs5 | 5'-GTGGACATGAACGCCAACAG-3' | 5'-AATCTCTGCGGCACAGTTTTG-3' |
| Pbrm1-predicted | 5'-TGCCCTTGTCCTCCATAAAG-3' | 5'-AAAGTTCGGATCCACAGCAG-3' |
| Apool | 5'-TGAAAAATGGGGTCATGGAT-3' | 5'-CTAATGTGGCCAGTCCCAGT-3' |
| MafK | 5'-CCCAAGCCCAACAAGACATT-3' | 5'-GCTGCTTCAGCCGAGTTACC-3' |
| SytI | 5'-CCGGACTGACTGATGGAGAAG-3' | 5'-ATCGGATGTACCCCCCATGT-3' |
| Syn-1 | 5'-CTCAAACTGCCTCTTCTGCTAATC-3' | 5'-ACTGTCCGTTCAAAGGGTCTATC-3' |
| Gapdh | 5'-GGTTACCAGGGCTGCCTTCT-3' | 5'-ATGGGTTTCCCGTTGATGAC-3' |
Figure 1Verification of genes identified from SSH by semi-quantitative RT-PCR. WT, PC12 (WT-Akt) cells; DN, PC12 (DN-Akt) cells.
A list of representative genes that are upregulated in PC12 (DN-Akt) cells compared to PC12 (WT-Akt) cells
| Functional classification | Functional classification |
|---|---|
Figure 2Analyses of . (A) Quantitative RT-PCR. mRNA level of the gene in each group of cells was normalized to the level of GAPDH mRNA and the transcript level of each gene in PC12 (WT-Akt) and PC12 (DN-Akt) cells is presented as a fold change from that of the PC12 (parental) cells. Parental, PC12 (parental) cells. *P < 0.05 (parental vs. WT). *P < 0.05 (parental vs. DN). n = 3-4, mean + SD. (B) Western blot analysis of SytI and Syn-1 protein levels in PC12 (WT-Akt) and PC12 (DN-Akt) cells.
Figure 3Effect of the Akt inhibitor AKTi-1/2 on mRNA levels for the . (A) Western blot analysis of pAkt(Ser-473) protein level in PC12 (WT-Akt) cells treated with various concentrations of AKTi-1/2 prior to 10 min treatment with NGF. (B) The percentage of neuritogenic PC12 (WT-Akt) cells treated with or without AKTi-1/2. Averages and standard deviations are derived from more than six fields of view. *P < 0.001 (n = 6-9, mean + SD). (C) Semi-quantitative RT-PCR. PC12 (WT-Akt) cells were treated with various concentrations of AKTi-1/2. (D) Quantitative RT-PCR. PC12 (WT-Akt) cells were treated with 10 μM of AKTi-1/2. The mRNA level is presented as a fold difference over that of vehicle-treated cells. *P < 0.05 (n = 3-4, mean + SD). (E) Western blot analysis of SytI and Syn-1 protein levels in PC12 (WT-Akt) cells treated with vehicle (Veh) or 10 μM AKTi-1/2.
Figure 4Effect of a Gsk3β inhibitor on gene expression in PC12 (DN-Akt) cells. PC12 (DN-Akt) cells were treated with 10 μM TWS119, a Gsk3β inhibitor for three hours. (A) Western blot analysis of β-catenin in PC12 (DN-Akt) cells treated with TWS119 to confirm that this agent works actively as a Gsk3β inhibitor in our experimental conditions. (B) mRNA levels for each gene are presented as a fold difference over that of vehicle-treated cells. *P < 0.05 (n = 3-4, mean + SD). (C) Western blot analysis of Syn-1 protein. Veh, vehicle; Inh, inhibitor.
Figure 5shRNA expression vector against Syn-1 reduces the endogenous Syn-1 transcript and protein levels. PC12 (DN-Akt) cells were infected with lentiviral shSyn-1#1, #2 or shControl (shCtrl). Syn-1 transcript was detected by semi-quantitative (A) and real-time (B) RT-PCR. (C) Western blot analysis.
Figure 6Knockdown of endogenous Syn-1 by shRNA decreases the numbers of neurites and branches. PC12 (DN-Akt) cells were infected with lentiviral shSyn-1#2 or shControl. (A) Fluorescent microscopic photographs of cells treated with NGF for 5 days. Scale = 50 μm. (B) The number of neurites originating from the neuritogenic cell body. (C) The percentage of branch-bearing neurites. (D) The percentage of neuritogenic cells among GFP-positive cells. Averages and standard deviations are derived from more than ten fields of view. * P < 0.001 and # P < 0.01 (n = 10-15, mean + SD).