Literature DB >> 20227517

Small RNAs in the animal gonad: guarding genomes and guiding development.

Nelson C Lau1.   

Abstract

Germ cells must safeguard, apportion, package, and deliver their genomes with exquisite precision to ensure proper reproduction and embryonic development. Classical genetic approaches have identified many genes controlling animal germ cell development, but only recently have some of these genes been linked to the RNA interference (RNAi) pathway, a gene silencing mechanism centered on small regulatory RNAs. Germ cells contain microRNAs (miRNAs), endogenous siRNAs (endo-siRNAs), and Piwi-interacting RNAs (piRNAs); these are bound by members of the Piwi/Argonaute protein family. piwi genes were known to specify germ cell development, but we now understand that mutations disrupting germline development can also affect small RNA accumulation. Small RNA studies in germ cells have revealed a surprising diversity of regulatory mechanisms and a unifying function for germline genes in controlling the spread of transposable elements. Future challenges will be to understand the production of germline small RNAs and to identify the full breadth of gene regulation by these RNAs. Progress in this area will likely impact biomedical goals of manipulating stem cells and preventing diseases caused by the transposition of mobile DNA elements. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20227517      PMCID: PMC2902580          DOI: 10.1016/j.biocel.2010.03.005

Source DB:  PubMed          Journal:  Int J Biochem Cell Biol        ISSN: 1357-2725            Impact factor:   5.085


  203 in total

1.  Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance.

Authors:  Huafang Shi; Appolinaire Djikeng; Christian Tschudi; Elisabetta Ullu
Journal:  Mol Cell Biol       Date:  2004-01       Impact factor: 4.272

2.  EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans.

Authors:  A Smardon; J M Spoerke; S C Stacey; M E Klein; N Mackin; E M Maine
Journal:  Curr Biol       Date:  2000-02-24       Impact factor: 10.834

3.  The miRNA pathway intrinsically controls self-renewal of Drosophila germline stem cells.

Authors:  Joseph K Park; Xiang Liu; Tamara J Strauss; Dennis M McKearin; Qinghua Liu
Journal:  Curr Biol       Date:  2007-02-22       Impact factor: 10.834

4.  Drosophila PIWI associates with chromatin and interacts directly with HP1a.

Authors:  Brent Brower-Toland; Seth D Findley; Ling Jiang; Li Liu; Hang Yin; Monica Dus; Pei Zhou; Sarah C R Elgin; Haifan Lin
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

5.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

6.  RNAi components are required for nuclear clustering of Polycomb group response elements.

Authors:  Charlotte Grimaud; Frédéric Bantignies; Manika Pal-Bhadra; Pallavi Ghana; Utpal Bhadra; Giacomo Cavalli
Journal:  Cell       Date:  2006-03-10       Impact factor: 41.582

7.  An endogenous small interfering RNA pathway in Drosophila.

Authors:  Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James A Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

8.  Mouse Piwi interactome identifies binding mechanism of Tdrkh Tudor domain to arginine methylated Miwi.

Authors:  Chen Chen; Jing Jin; D Andrew James; Melanie A Adams-Cioaba; Jin Gyoon Park; Yahong Guo; Enrico Tenaglia; Chao Xu; Gerald Gish; Jinrong Min; Tony Pawson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-16       Impact factor: 11.205

9.  Dicer is essential for mouse development.

Authors:  Emily Bernstein; Sang Yong Kim; Michelle A Carmell; Elizabeth P Murchison; Heather Alcorn; Mamie Z Li; Alea A Mills; Stephen J Elledge; Kathryn V Anderson; Gregory J Hannon
Journal:  Nat Genet       Date:  2003-10-05       Impact factor: 38.330

10.  MicroRNA biogenesis is required for mouse primordial germ cell development and spermatogenesis.

Authors:  Katsuhiko Hayashi; Susana M Chuva de Sousa Lopes; Masahiro Kaneda; Fuchou Tang; Petra Hajkova; Kaiqin Lao; Donal O'Carroll; Partha P Das; Alexander Tarakhovsky; Eric A Miska; M Azim Surani
Journal:  PLoS One       Date:  2008-03-05       Impact factor: 3.240

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  23 in total

1.  Epigenetic reprogramming during vegetative phase change in maize.

Authors:  Hong Li; Michael Freeling; Damon Lisch
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-06       Impact factor: 11.205

Review 2.  The sperm nucleus: chromatin, RNA, and the nuclear matrix.

Authors:  Graham D Johnson; Claudia Lalancette; Amelia K Linnemann; Frédéric Leduc; Guylain Boissonneault; Stephen A Krawetz
Journal:  Reproduction       Date:  2010-09-27       Impact factor: 3.906

Review 3.  Improving miRNA Delivery by Optimizing miRNA Expression Cassettes in Diverse Virus Vectors.

Authors:  Elena Herrera-Carrillo; Ying Poi Liu; Ben Berkhout
Journal:  Hum Gene Ther Methods       Date:  2017-08       Impact factor: 2.396

4.  Promoters recognized by forkhead proteins exist for individual 21U-RNAs.

Authors:  Germano Cecere; Grace X Y Zheng; Andres R Mansisidor; Katherine E Klymko; Alla Grishok
Journal:  Mol Cell       Date:  2012-07-19       Impact factor: 17.970

Review 5.  Deciphering arginine methylation: Tudor tells the tale.

Authors:  Chen Chen; Timothy J Nott; Jing Jin; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2011-09-14       Impact factor: 94.444

6.  Mmi1 RNA surveillance machinery directs RNAi complex RITS to specific meiotic genes in fission yeast.

Authors:  Edwige Hiriart; Aurélia Vavasseur; Leila Touat-Todeschini; Akira Yamashita; Benoit Gilquin; Emeline Lambert; Jonathan Perot; Yuichi Shichino; Nicolas Nazaret; Cyril Boyault; Joel Lachuer; Daniel Perazza; Masayuki Yamamoto; André Verdel
Journal:  EMBO J       Date:  2012-04-20       Impact factor: 11.598

Review 7.  Untangling the web: the diverse functions of the PIWI/piRNA pathway.

Authors:  Sneha Ramesh Mani; Celina E Juliano
Journal:  Mol Reprod Dev       Date:  2013-06-27       Impact factor: 2.609

8.  Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans.

Authors:  Colin C Conine; James J Moresco; Weifeng Gu; Masaki Shirayama; Darryl Conte; John R Yates; Craig C Mello
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

9.  Organic small hairpin RNAs (OshR): a do-it-yourself platform for transgene-based gene silencing.

Authors:  Mei Zeng; Marissa S Kuzirian; Lamia Harper; Suzanne Paradis; Takuya Nakayama; Nelson C Lau
Journal:  Methods       Date:  2013-05-23       Impact factor: 3.608

10.  Piwi Proteins and piRNAs step onto the systems biology stage.

Authors:  Josef P Clark; Nelson C Lau
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

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