Literature DB >> 21135217

Epigenetic reprogramming during vegetative phase change in maize.

Hong Li1, Michael Freeling, Damon Lisch.   

Abstract

An important step during plant development is the transition from juvenile to adult growth. It is only after this transition that plants are reproductively competent. Given the great danger that transposon activity represents to the germ line, this may also be an important period during development with respect to transposon regulation and silencing. We demonstrate that a change in expression of a key component of the RNA silencing pathway is associated with both vegetative phase change and shifts in epigenetic regulation of a maize transposon.

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Year:  2010        PMID: 21135217      PMCID: PMC3009802          DOI: 10.1073/pnas.1016884108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

1.  Two small regulatory RNAs establish opposing fates of a developmental axis.

Authors:  Fabio T S Nogueira; Shahinez Madi; Daniel H Chitwood; Michelle T Juarez; Marja C P Timmermans
Journal:  Genes Dev       Date:  2007-04-01       Impact factor: 11.361

2.  SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice.

Authors:  Yong Ding; Xia Wang; Lei Su; Jixian Zhai; Shouyun Cao; Dongfen Zhang; Chunyan Liu; Yuping Bi; Qian Qian; Zhukuan Cheng; Chengcai Chu; Xiaofeng Cao
Journal:  Plant Cell       Date:  2007-01-26       Impact factor: 11.277

Review 3.  Epigenetic regulation of transposable elements in plants.

Authors:  Damon Lisch
Journal:  Annu Rev Plant Biol       Date:  2009       Impact factor: 26.379

4.  Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis.

Authors:  Christine Hunter; Matthew R Willmann; Gang Wu; Manabu Yoshikawa; María de la Luz Gutiérrez-Nava; Scott R Poethig
Journal:  Development       Date:  2006-07-03       Impact factor: 6.868

5.  Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway.

Authors:  Damien Garcia; Sarah A Collier; Mary E Byrne; Robert A Martienssen
Journal:  Curr Biol       Date:  2006-05-09       Impact factor: 10.834

6.  Coordinate suppression of mutations caused by Robertson's mutator transposons in maize.

Authors:  R Martienssen; A Baron
Journal:  Genetics       Date:  1994-03       Impact factor: 4.562

7.  SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.

Authors:  Angela Peragine; Manabu Yoshikawa; Gang Wu; Heidi L Albrecht; R Scott Poethig
Journal:  Genes Dev       Date:  2004-10-01       Impact factor: 11.361

8.  Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways.

Authors:  Patrice Dunoyer; Christophe Himber; Virginia Ruiz-Ferrer; Abdelmalek Alioua; Olivier Voinnet
Journal:  Nat Genet       Date:  2007-06-10       Impact factor: 38.330

9.  Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors.

Authors:  Margaret Roth Woodhouse; Michael Freeling; Damon Lisch
Journal:  PLoS Biol       Date:  2006-10       Impact factor: 8.029

10.  Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization.

Authors:  Max Haring; Sascha Offermann; Tanja Danker; Ina Horst; Christoph Peterhansel; Maike Stam
Journal:  Plant Methods       Date:  2007-09-24       Impact factor: 4.993

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  28 in total

1.  Repeat associated small RNAs vary among parents and following hybridization in maize.

Authors:  Wesley T Barber; Wei Zhang; Hlaing Win; Kranthi K Varala; Jane E Dorweiler; Matthew E Hudson; Stephen P Moose
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

Review 2.  Integrated genomics and molecular breeding approaches for dissecting the complex quantitative traits in crop plants.

Authors:  Alice Kujur; Maneesha S Saxena; Deepak Bajaj; Swarup K Parida
Journal:  J Biosci       Date:  2013-12       Impact factor: 1.826

3.  FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.

Authors:  Shojiro Tamaki; Hiroyuki Tsuji; Ayana Matsumoto; Akiko Fujita; Zenpei Shimatani; Rie Terada; Tomoaki Sakamoto; Tetsuya Kurata; Ko Shimamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

4.  Open chromatin reveals the functional maize genome.

Authors:  Eli Rodgers-Melnick; Daniel L Vera; Hank W Bass; Edward S Buckler
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-16       Impact factor: 11.205

Review 5.  Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.

Authors:  Nathan M Springer; Damon Lisch; Qing Li
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

6.  The mop1 mutation affects the recombination landscape in maize.

Authors:  Meixia Zhao; Jia-Chi Ku; Beibei Liu; Diya Yang; Liangwei Yin; Tyshawn J Ferrell; Claire E Stoll; Wei Guo; Xinyan Zhang; Dafang Wang; Chung-Ju Rachel Wang; Damon Lisch
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-16       Impact factor: 11.205

7.  The WD40-repeat proteins NFC101 and NFC102 regulate different aspects of maize development through chromatin modification.

Authors:  Iride Mascheretti; Raffaella Battaglia; Davide Mainieri; Andrea Altana; Massimiliano Lauria; Vincenzo Rossi
Journal:  Plant Cell       Date:  2013-02-19       Impact factor: 11.277

8.  Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.

Authors:  Joseph P Calarco; Filipe Borges; Mark T A Donoghue; Frédéric Van Ex; Pauline E Jullien; Telma Lopes; Rui Gardner; Frédéric Berger; José A Feijó; Jörg D Becker; Robert A Martienssen
Journal:  Cell       Date:  2012-09-20       Impact factor: 41.582

9.  Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention.

Authors:  Kyria Roessler; Alexandros Bousios; Esteban Meca; Brandon S Gaut
Journal:  Genome Biol Evol       Date:  2018-03-01       Impact factor: 3.416

10.  Analysis of DNA methylation of perennial ryegrass under drought using the methylation-sensitive amplification polymorphism (MSAP) technique.

Authors:  Xiao-Mei Tang; Xiang Tao; Yan Wang; Dong-Wei Ma; Dan Li; Hong Yang; Xin-Rong Ma
Journal:  Mol Genet Genomics       Date:  2014-06-12       Impact factor: 3.291

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