Literature DB >> 20212118

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics.

Paula F Campos1, Eske Willerslev, Andrei Sher, Ludovic Orlando, Erik Axelsson, Alexei Tikhonov, Kim Aaris-Sørensen, Alex D Greenwood, Ralf-Dietrich Kahlke, Pavel Kosintsev, Tatiana Krakhmalnaya, Tatyana Kuznetsova, Philippe Lemey, Ross MacPhee, Christopher A Norris, Kieran Shepherd, Marc A Suchard, Grant D Zazula, Beth Shapiro, M Thomas P Gilbert.   

Abstract

The causes of the late Pleistocene megafaunal extinctions are poorly understood. Different lines of evidence point to climate change, the arrival of humans, or a combination of these events as the trigger. Although many species went extinct, others, such as caribou and bison, survived to the present. The musk ox has an intermediate story: relatively abundant during the Pleistocene, it is now restricted to Greenland and the Arctic Archipelago. In this study, we use ancient DNA sequences, temporally unbiased summary statistics, and Bayesian analytical techniques to infer musk ox population dynamics throughout the late Pleistocene and Holocene. Our results reveal that musk ox genetic diversity was much higher during the Pleistocene than at present, and has undergone several expansions and contractions over the past 60,000 years. Northeast Siberia was of key importance, as it was the geographic origin of all samples studied and held a large diverse population until local extinction at approximately 45,000 radiocarbon years before present ((14)C YBP). Subsequently, musk ox genetic diversity reincreased at ca. 30,000 (14)C YBP, recontracted at ca. 18,000 (14)C YBP, and finally recovered in the middle Holocene. The arrival of humans into relevant areas of the musk ox range did not affect their mitochondrial diversity, and both musk ox and humans expanded into Greenland concomitantly. Thus, their population dynamics are better explained by a nonanthropogenic cause (for example, environmental change), a hypothesis supported by historic observations on the sensitivity of the species to both climatic warming and fluctuations.

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Year:  2010        PMID: 20212118      PMCID: PMC2851807          DOI: 10.1073/pnas.0907189107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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2.  Low genetic variation in muskoxen (Ovibos moschatus) from western Greenland using microsatellites.

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3.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

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Authors:  J Tyler Faith; Todd A Surovell
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-23       Impact factor: 11.205

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Journal:  Immunol Rev       Date:  1999-02       Impact factor: 12.988

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Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

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  43 in total

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Authors:  Martyna Molak; Simon Y W Ho
Journal:  J Mol Evol       Date:  2011-11-20       Impact factor: 2.395

2.  A Bayesian phylogenetic method to estimate unknown sequence ages.

Authors:  Beth Shapiro; Simon Y W Ho; Alexei J Drummond; Marc A Suchard; Oliver G Pybus; Andrew Rambaut
Journal:  Mol Biol Evol       Date:  2010-10-01       Impact factor: 16.240

3.  Life and extinction of megafauna in the ice-age Arctic.

Authors:  Daniel H Mann; Pamela Groves; Richard E Reanier; Benjamin V Gaglioti; Michael L Kunz; Beth Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

4.  True single-molecule DNA sequencing of a pleistocene horse bone.

Authors:  Ludovic Orlando; Aurelien Ginolhac; Maanasa Raghavan; Julia Vilstrup; Morten Rasmussen; Kim Magnussen; Kathleen E Steinmann; Philipp Kapranov; John F Thompson; Grant Zazula; Duane Froese; Ida Moltke; Beth Shapiro; Michael Hofreiter; Khaled A S Al-Rasheid; M Thomas P Gilbert; Eske Willerslev
Journal:  Genome Res       Date:  2011-07-29       Impact factor: 9.043

5.  Rapid, global demographic expansions after the origins of agriculture.

Authors:  Christopher R Gignoux; Brenna M Henn; Joanna L Mountain
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

6.  Erysipelothrix rhusiopathiae associated with recent widespread muskox mortalities in the Canadian Arctic.

Authors:  Susan Kutz; Trent Bollinger; Marsha Branigan; Sylvia Checkley; Tracy Davison; Mathieu Dumond; Brett Elkin; Taya Forde; Wendy Hutchins; Amanda Niptanatiak; Karin Orsel
Journal:  Can Vet J       Date:  2015-06       Impact factor: 1.008

7.  Extinct New Zealand megafauna were not in decline before human colonization.

Authors:  Morten Erik Allentoft; Rasmus Heller; Charlotte L Oskam; Eline D Lorenzen; Marie L Hale; M Thomas P Gilbert; Christopher Jacomb; Richard N Holdaway; Michael Bunce
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

8.  Overkill, glacial history, and the extinction of North America's Ice Age megafauna.

Authors:  David J Meltzer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-09       Impact factor: 11.205

9.  Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates.

Authors:  Mandev S Gill; Philippe Lemey; Shannon N Bennett; Roman Biek; Marc A Suchard
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10.  Empirical calibrated radiocarbon sampler: a tool for incorporating radiocarbon-date and calibration error into Bayesian phylogenetic analyses of ancient DNA.

Authors:  Martyna Molak; Marc A Suchard; Simon Y W Ho; David W Beilman; Beth Shapiro
Journal:  Mol Ecol Resour       Date:  2014-07-04       Impact factor: 7.090

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