Literature DB >> 20194737

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear.

Charlotte Lindqvist1, Stephan C Schuster, Yazhou Sun, Sandra L Talbot, Ji Qi, Aakrosh Ratan, Lynn P Tomsho, Lindsay Kasson, Eve Zeyl, Jon Aars, Webb Miller, Olafur Ingólfsson, Lutz Bachmann, Oystein Wiig.   

Abstract

The polar bear has become the flagship species in the climate-change discussion. However, little is known about how past climate impacted its evolution and persistence, given an extremely poor fossil record. Although it is undisputed from analyses of mitochondrial (mt) DNA that polar bears constitute a lineage within the genetic diversity of brown bears, timing estimates of their divergence have differed considerably. Using next-generation sequencing technology, we have generated a complete, high-quality mt genome from a stratigraphically validated 130,000- to 110,000-year-old polar bear jawbone. In addition, six mt genomes were generated of extant polar bears from Alaska and brown bears from the Admiralty and Baranof islands of the Alexander Archipelago of southeastern Alaska and Kodiak Island. We show that the phylogenetic position of the ancient polar bear lies almost directly at the branching point between polar bears and brown bears, elucidating a unique morphologically and molecularly documented fossil link between living mammal species. Molecular dating and stable isotope analyses also show that by very early in their evolutionary history, polar bears were already inhabitants of the Artic sea ice and had adapted very rapidly to their current and unique ecology at the top of the Arctic marine food chain. As such, polar bears provide an excellent example of evolutionary opportunism within a widespread mammalian lineage.

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Year:  2010        PMID: 20194737      PMCID: PMC2841953          DOI: 10.1073/pnas.0914266107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Phylogeography of mitochondrial DNA variation in brown bears and polar bears.

Authors:  G F Shields; D Adams; G Garner; M Labelle; J Pietsch; M Ramsay; C Schwartz; K Titus; S Williamson
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Review 2.  Molecular clocks: when times are a-changin'.

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Journal:  Trends Genet       Date:  2005-12-13       Impact factor: 11.639

3.  Late Pleistocene demography and the appearance of modern human behavior.

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Journal:  Science       Date:  2009-06-05       Impact factor: 47.728

Review 4.  Ancient mitogenomics.

Authors:  Simon Y W Ho; M Thomas P Gilbert
Journal:  Mitochondrion       Date:  2009-09-27       Impact factor: 4.160

5.  Mammalian mitogenomic relationships and the root of the eutherian tree.

Authors:  Ulfur Arnason; Joseph A Adegoke; Kristina Bodin; Erik W Born; Yuzine B Esa; Anette Gullberg; Maria Nilsson; Roger V Short; Xiufeng Xu; Axel Janke
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

6.  Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet.

Authors:  Céline Bon; Nicolas Caudy; Maud de Dieuleveult; Philippe Fosse; Michel Philippe; Frédéric Maksud; Eliane Beraud-Colomb; Eric Bouzaid; Rym Kefi; Christelle Laugier; Bernard Rousseau; Didier Casane; Johannes van der Plicht; Jean-Marc Elalouf
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-27       Impact factor: 11.205

7.  Consumption of salmon by Alaskan brown bears: a trade-off between nutritional requirements and the risk of infanticide?

Authors:  Merav Ben-David; Kimberly Titus; LaVern R Beier
Journal:  Oecologia       Date:  2003-12-13       Impact factor: 3.225

8.  The evolution of Arctic marine mammals.

Authors:  C R Harington
Journal:  Ecol Appl       Date:  2008-03       Impact factor: 4.657

9.  The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus).

Authors:  Webb Miller; Daniela I Drautz; Jan E Janecka; Arthur M Lesk; Aakrosh Ratan; Lynn P Tomsho; Mike Packard; Yeting Zhang; Lindsay R McClellan; Ji Qi; Fangqing Zhao; M Thomas P Gilbert; Love Dalén; Juan Luis Arsuaga; Per G P Ericson; Daniel H Huson; Kristofer M Helgen; William J Murphy; Anders Götherström; Stephan C Schuster
Journal:  Genome Res       Date:  2009-01-12       Impact factor: 9.043

10.  Relaxed phylogenetics and dating with confidence.

Authors:  Alexei J Drummond; Simon Y W Ho; Matthew J Phillips; Andrew Rambaut
Journal:  PLoS Biol       Date:  2006-03-14       Impact factor: 8.029

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  46 in total

1.  Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape.

Authors:  Geoffrey P Morris; Paul P Grabowski; Justin O Borevitz
Journal:  Mol Ecol       Date:  2011-11-08       Impact factor: 6.185

2.  Himalayan 'yeti' DNA: polar bear or DNA degradation? A comment on 'Genetic analysis of hair samples attributed to yeti' by Sykes et al. (2014).

Authors:  C J Edwards; R Barnett
Journal:  Proc Biol Sci       Date:  2015-02-07       Impact factor: 5.349

3.  Response to Edward and Barnett.

Authors:  Terry W Melton; Michel Sartori; Bryan C Sykes
Journal:  Proc Biol Sci       Date:  2015-02-07       Impact factor: 5.349

4.  Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.

Authors:  Jesse Dabney; Michael Knapp; Isabelle Glocke; Marie-Theres Gansauge; Antje Weihmann; Birgit Nickel; Cristina Valdiosera; Nuria García; Svante Pääbo; Juan-Luis Arsuaga; Matthias Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

5.  Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX.

Authors:  Mikkel Schubert; Luca Ermini; Clio Der Sarkissian; Hákon Jónsson; Aurélien Ginolhac; Robert Schaefer; Michael D Martin; Ruth Fernández; Martin Kircher; Molly McCue; Eske Willerslev; Ludovic Orlando
Journal:  Nat Protoc       Date:  2014-04-10       Impact factor: 13.491

6.  Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

Authors:  Webb Miller; Stephan C Schuster; Andreanna J Welch; Aakrosh Ratan; Oscar C Bedoya-Reina; Fangqing Zhao; Hie Lim Kim; Richard C Burhans; Daniela I Drautz; Nicola E Wittekindt; Lynn P Tomsho; Enrique Ibarra-Laclette; Luis Herrera-Estrella; Elizabeth Peacock; Sean Farley; George K Sage; Karyn Rode; Martyn Obbard; Rafael Montiel; Lutz Bachmann; Olafur Ingólfsson; Jon Aars; Thomas Mailund; Oystein Wiig; Sandra L Talbot; Charlotte Lindqvist
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-23       Impact factor: 11.205

Review 7.  Paleopopulation genetics.

Authors:  Jeffrey D Wall; Montgomery Slatkin
Journal:  Annu Rev Genet       Date:  2012-09-17       Impact factor: 16.830

8.  Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.

Authors:  Shiping Liu; Eline D Lorenzen; Matteo Fumagalli; Bo Li; Kelley Harris; Zijun Xiong; Long Zhou; Thorfinn Sand Korneliussen; Mehmet Somel; Courtney Babbitt; Greg Wray; Jianwen Li; Weiming He; Zhuo Wang; Wenjing Fu; Xueyan Xiang; Claire C Morgan; Aoife Doherty; Mary J O'Connell; James O McInerney; Erik W Born; Love Dalén; Rune Dietz; Ludovic Orlando; Christian Sonne; Guojie Zhang; Rasmus Nielsen; Eske Willerslev; Jun Wang
Journal:  Cell       Date:  2014-05-08       Impact factor: 41.582

9.  Influence of climate warming on arctic mammals? New insights from ancient DNA studies of the collared lemming Dicrostonyx torquatus.

Authors:  Stefan Prost; Nickolay Smirnov; Vadim B Fedorov; Robert S Sommer; Mathias Stiller; Doris Nagel; Michael Knapp; Michael Hofreiter
Journal:  PLoS One       Date:  2010-05-27       Impact factor: 3.240

10.  Biomechanical consequences of rapid evolution in the polar bear lineage.

Authors:  Graham J Slater; Borja Figueirido; Leeann Louis; Paul Yang; Blaire Van Valkenburgh
Journal:  PLoS One       Date:  2010-11-05       Impact factor: 3.240

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