Literature DB >> 20192776

Ribosome structure and dynamics during translocation and termination.

Jack A Dunkle1, Jamie H D Cate.   

Abstract

Protein biosynthesis, or translation, occurs on the ribosome, a large RNA-protein assembly universally conserved in all forms of life. Over the last decade, structures of the small and large ribosomal subunits and of the intact ribosome have begun to reveal the molecular details of how the ribosome works. Both cryo-electron microscopy and X-ray crystallography continue to provide fresh insights into the mechanism of translation. In this review, we describe the most recent structural models of the bacterial ribosome that shed light on the movement of messenger RNA and transfer RNA on the ribosome after each peptide bond is formed, a process termed translocation. We also discuss recent structures that reveal the molecular basis for stop codon recognition during translation termination. Finally, we review recent advances in understanding how bacteria handle errors in both translocation and termination.

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Year:  2010        PMID: 20192776     DOI: 10.1146/annurev.biophys.37.032807.125954

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  45 in total

1.  Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.

Authors:  Jie Zhou; Laura Lancaster; Sergei Trakhanov; Harry F Noller
Journal:  RNA       Date:  2011-12-20       Impact factor: 4.942

2.  Microfluidic mixer designed for performing single-molecule kinetics with confocal detection on timescales from milliseconds to minutes.

Authors:  Bengt Wunderlich; Daniel Nettels; Stephan Benke; Jennifer Clark; Sascha Weidner; Hagen Hofmann; Shawn H Pfeil; Benjamin Schuler
Journal:  Nat Protoc       Date:  2013-07-11       Impact factor: 13.491

3.  Dynamics of ribosomes and release factors during translation termination in E. coli.

Authors:  Sarah Adio; Heena Sharma; Tamara Senyushkina; Prajwal Karki; Cristina Maracci; Ingo Wohlgemuth; Wolf Holtkamp; Frank Peske; Marina V Rodnina
Journal:  Elife       Date:  2018-06-11       Impact factor: 8.140

4.  Cryoelectron microscopy structures of the ribosome complex in intermediate states during tRNA translocation.

Authors:  Jie Fu; James B Munro; Scott C Blanchard; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

5.  Molecular determinants of release factor 2 for ArfA-mediated ribosome rescue.

Authors:  Daisuke Kurita; Tatsuhiko Abo; Hyouta Himeno
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.157

6.  Mechanism of premature translation termination on a sense codon.

Authors:  Egor Svidritskiy; Gabriel Demo; Andrei A Korostelev
Journal:  J Biol Chem       Date:  2018-06-25       Impact factor: 5.157

7.  In vivo biochemistry in bacterial cells using FRAP: insight into the translation cycle.

Authors:  Paula Montero Llopis; Oleksii Sliusarenko; Jennifer Heinritz; Christine Jacobs-Wagner
Journal:  Biophys J       Date:  2012-11-07       Impact factor: 4.033

8.  Step back for seminal translation.

Authors:  Shu-Bing Qian
Journal:  Nat Struct Mol Biol       Date:  2016-05-04       Impact factor: 15.369

9.  The impact of aminoglycosides on the dynamics of translation elongation.

Authors:  Albert Tsai; Sotaro Uemura; Magnus Johansson; Elisabetta Viani Puglisi; R Andrew Marshall; Colin Echeverría Aitken; Jonas Korlach; Måns Ehrenberg; Joseph D Puglisi
Journal:  Cell Rep       Date:  2013-02-14       Impact factor: 9.423

Review 10.  Crystal structures of 70S ribosomes bound to release factors RF1, RF2 and RF3.

Authors:  Jie Zhou; Andrei Korostelev; Laura Lancaster; Harry F Noller
Journal:  Curr Opin Struct Biol       Date:  2012-09-19       Impact factor: 6.809

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