Literature DB >> 22999888

Crystal structures of 70S ribosomes bound to release factors RF1, RF2 and RF3.

Jie Zhou1, Andrei Korostelev, Laura Lancaster, Harry F Noller.   

Abstract

Termination is a crucial step in translation, most notably because premature termination can lead to toxic truncated polypeptides. Most interesting is the fact that stop codons are read by a completely different mechanism from that of sense codons. In recent years, rapid progress has been made in the structural biology of complexes of bacterial ribosomes bound to translation termination factors, much of which has been discussed in earlier reviews [1-5]. Here, we present a brief overview of the structures of bacterial translation termination complexes. The first part summarizes what has been learned from crystal structures of complexes containing the class I release factors RF1 and RF2. In the second part, we discuss the results and implications of two recent X-ray structures of complexes of ribosomes bound to the translational GTPase RF3. These structures have provided many insights and a number of surprises. While structures alone do not tell us how these complicated molecular assemblies work, is it nevertheless clear that it will not be possible to understand their mechanisms without detailed structural information.
Copyright © 2012. Published by Elsevier Ltd.

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Year:  2012        PMID: 22999888      PMCID: PMC3982307          DOI: 10.1016/j.sbi.2012.08.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  56 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

2.  A posttermination ribosomal complex is the guanine nucleotide exchange factor for peptide release factor RF3.

Authors:  A V Zavialov; R H Buckingham; M Ehrenberg
Journal:  Cell       Date:  2001-10-05       Impact factor: 41.582

3.  Structure of the Escherichia coli ribosomal termination complex with release factor 2.

Authors:  Bruno P Klaholz; Tillmann Pape; Andrey V Zavialov; Alexander G Myasnikov; Elena V Orlova; Bente Vestergaard; Måns Ehrenberg; Marin van Heel
Journal:  Nature       Date:  2003-01-02       Impact factor: 49.962

4.  Visualization of release factor 3 on the ribosome during termination of protein synthesis.

Authors:  Bruno P Klaholz; Alexander G Myasnikov; Marin Van Heel
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

5.  Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.

Authors:  Christian M T Spahn; Maria G Gomez-Lorenzo; Robert A Grassucci; Rene Jørgensen; Gregers R Andersen; Roland Beckmann; Pawel A Penczek; Juan P G Ballesta; Joachim Frank
Journal:  EMBO J       Date:  2004-02-19       Impact factor: 11.598

6.  A tripeptide 'anticodon' deciphers stop codons in messenger RNA.

Authors:  K Ito; M Uno; Y Nakamura
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

Review 7.  Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases.

Authors:  K E Jaeger; B W Dijkstra; M T Reetz
Journal:  Annu Rev Microbiol       Date:  1999       Impact factor: 15.500

8.  X-ray snapshots of serine protease catalysis reveal a tetrahedral intermediate.

Authors:  R C Wilmouth; K Edman; R Neutze; P A Wright; I J Clifton; T R Schneider; C J Schofield; J Hajdu
Journal:  Nat Struct Biol       Date:  2001-08

9.  Bacterial polypeptide release factor RF2 is structurally distinct from eukaryotic eRF1.

Authors:  B Vestergaard; L B Van; G R Andersen; J Nyborg; R H Buckingham; M Kjeldgaard
Journal:  Mol Cell       Date:  2001-12       Impact factor: 17.970

10.  A cryo-electron microscopic study of ribosome-bound termination factor RF2.

Authors:  Urmila B S Rawat; Andrey V Zavialov; Jayati Sengupta; Mikel Valle; Robert A Grassucci; Jamie Linde; Bente Vestergaard; Måns Ehrenberg; Joachim Frank
Journal:  Nature       Date:  2003-01-02       Impact factor: 49.962

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  17 in total

Review 1.  Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology.

Authors:  Assaf Katz; Sara Elgamal; Andrei Rajkovic; Michael Ibba
Journal:  Mol Microbiol       Date:  2016-06-28       Impact factor: 3.501

2.  Structural basis for ArfA-RF2-mediated translation termination on mRNAs lacking stop codons.

Authors:  Paul Huter; Claudia Müller; Bertrand Beckert; Stefan Arenz; Otto Berninghausen; Roland Beckmann; Daniel N Wilson
Journal:  Nature       Date:  2016-12-01       Impact factor: 49.962

3.  Distinct roles for release factor 1 and release factor 2 in translational quality control.

Authors:  Alexandros D Petropoulos; Megan E McDonald; Rachel Green; Hani S Zaher
Journal:  J Biol Chem       Date:  2014-05-05       Impact factor: 5.157

Review 4.  Bacterial Protein Synthesis as a Target for Antibiotic Inhibition.

Authors:  Stefan Arenz; Daniel N Wilson
Journal:  Cold Spring Harb Perspect Med       Date:  2016-09-01       Impact factor: 6.915

5.  Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome.

Authors:  Egor Svidritskiy; Clarence Ling; Dmitri N Ermolenko; Andrei A Korostelev
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-03       Impact factor: 11.205

6.  Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.

Authors:  William E Pierson; Eric D Hoffer; Hannah E Keedy; Carrie L Simms; Christine M Dunham; Hani S Zaher
Journal:  Cell Rep       Date:  2016-09-27       Impact factor: 9.423

7.  Crystal structure of the 70S ribosome bound with the Q253P mutant form of release factor RF2.

Authors:  Natalia Santos; Jianyu Zhu; John Paul Donohue; Andrei A Korostelev; Harry F Noller
Journal:  Structure       Date:  2013-06-13       Impact factor: 5.006

Review 8.  Structural Insights into tRNA Dynamics on the Ribosome.

Authors:  Xabier Agirrezabala; Mikel Valle
Journal:  Int J Mol Sci       Date:  2015-04-30       Impact factor: 5.923

9.  Saccharomyces cerevisiae Ski7 Is a GTP-Binding Protein Adopting the Characteristic Conformation of Active Translational GTPases.

Authors:  Eva Kowalinski; Anthony Schuller; Rachel Green; Elena Conti
Journal:  Structure       Date:  2015-06-04       Impact factor: 5.006

10.  Repurposing tRNAs for nonsense suppression.

Authors:  Suki Albers; Bertrand Beckert; Marco C Matthies; Chandra Sekhar Mandava; Raphael Schuster; Carolin Seuring; Maria Riedner; Suparna Sanyal; Andrew E Torda; Daniel N Wilson; Zoya Ignatova
Journal:  Nat Commun       Date:  2021-06-22       Impact factor: 14.919

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