Literature DB >> 20187952

Biomedical informatics and translational medicine.

Indra Neil Sarkar1.   

Abstract

Biomedical informatics involves a core set of methodologies that can provide a foundation for crossing the "translational barriers" associated with translational medicine. To this end, the fundamental aspects of biomedical informatics (e.g., bioinformatics, imaging informatics, clinical informatics, and public health informatics) may be essential in helping improve the ability to bring basic research findings to the bedside, evaluate the efficacy of interventions across communities, and enable the assessment of the eventual impact of translational medicine innovations on health policies. Here, a brief description is provided for a selection of key biomedical informatics topics (Decision Support, Natural Language Processing, Standards, Information Retrieval, and Electronic Health Records) and their relevance to translational medicine. Based on contributions and advancements in each of these topic areas, the article proposes that biomedical informatics practitioners ("biomedical informaticians") can be essential members of translational medicine teams.

Entities:  

Mesh:

Year:  2010        PMID: 20187952      PMCID: PMC2837642          DOI: 10.1186/1479-5876-8-22

Source DB:  PubMed          Journal:  J Transl Med        ISSN: 1479-5876            Impact factor:   5.531


  205 in total

1.  Towards a medical question-answering system: a feasibility study.

Authors:  Pierre Jacquemart; Pierre Zweigenbaum
Journal:  Stud Health Technol Inform       Date:  2003

2.  Bio-ontologies-fast and furious.

Authors:  Judith Blake
Journal:  Nat Biotechnol       Date:  2004-06       Impact factor: 54.908

Review 3.  An interdepartmental Ph.D. program in computational biology and bioinformatics: the Yale perspective.

Authors:  Mark Gerstein; Dov Greenbaum; Kei Cheung; Perry L Miller
Journal:  J Biomed Inform       Date:  2006-03-06       Impact factor: 6.317

4.  Medical informatics and bioinformatics: integration or evolution through scientific crises?

Authors:  V Maojo; C Kulikowski
Journal:  Methods Inf Med       Date:  2006       Impact factor: 2.176

5.  Human and automated coding of rehabilitation discharge summaries according to the International Classification of Functioning, Disability, and Health.

Authors:  Rita Kukafka; Michael E Bales; Ann Burkhardt; Carol Friedman
Journal:  J Am Med Inform Assoc       Date:  2006-06-23       Impact factor: 4.497

6.  Recommendations of the International Medical Informatics Association (IMIA) on Education in Biomedical and Health Informatics. First Revision.

Authors:  John Mantas; Elske Ammenwerth; George Demiris; Arie Hasman; Reinhold Haux; William Hersh; Evelyn Hovenga; K C Lun; Heimar Marin; Fernando Martin-Sanchez; Graham Wright
Journal:  Methods Inf Med       Date:  2010-01-07       Impact factor: 2.176

Review 7.  Translational informatics: enabling high-throughput research paradigms.

Authors:  Philip R O Payne; Peter J Embi; Chandan K Sen
Journal:  Physiol Genomics       Date:  2009-09-08       Impact factor: 3.107

8.  Effects of computer-based clinical decision support systems on physician performance and patient outcomes: a systematic review.

Authors:  D L Hunt; R B Haynes; S E Hanna; K Smith
Journal:  JAMA       Date:  1998-10-21       Impact factor: 56.272

Review 9.  Managing medical images and clinical information: InCor's experience.

Authors:  Sergio S Furuie; Marina S Rebelo; Ramon A Moreno; Marcelo Santos; Nivaldo Bertozzo; Gustavo H M B Motta; Fabio A Pires; Marco A Gutierrez
Journal:  IEEE Trans Inf Technol Biomed       Date:  2007-01

10.  The impact of SNOMED CT revisions on a mapped interface terminology: terminology development and implementation issues.

Authors:  Geraldine Wade; S Trent Rosenbloom
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

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  29 in total

1.  Using Electronic Health Records To Generate Phenotypes For Research.

Authors:  Sarah A Pendergrass; Dana C Crawford
Journal:  Curr Protoc Hum Genet       Date:  2018-12-05

2.  Data analysis and data mining: current issues in biomedical informatics.

Authors:  R Bellazzi; M Diomidous; I N Sarkar; K Takabayashi; A Ziegler; A T McCray
Journal:  Methods Inf Med       Date:  2011       Impact factor: 2.176

3.  Gap analysis of biomedical informatics graduate education competencies.

Authors:  Anna L Ritko; Michelle Odlum
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

4.  On determining factors for good research in biomedical and health informatics. Some lessons learned.

Authors:  R Haux
Journal:  Yearb Med Inform       Date:  2014-05-22

5.  An algorithm for the classification of mRNA patterns in eosinophilic esophagitis: Integration of machine learning.

Authors:  Benjamin F Sallis; Lena Erkert; Sherezade Moñino-Romero; Utkucan Acar; Rina Wu; Liza Konnikova; Willem S Lexmond; Matthew J Hamilton; W Augustine Dunn; Zsolt Szepfalusi; Jon A Vanderhoof; Scott B Snapper; Jerrold R Turner; Jeffrey D Goldsmith; Lisa A Spencer; Samuel Nurko; Edda Fiebiger
Journal:  J Allergy Clin Immunol       Date:  2017-12-19       Impact factor: 10.793

Review 6.  Clinical Decision Support: a 25 Year Retrospective and a 25 Year Vision.

Authors:  B Middleton; D F Sittig; A Wright
Journal:  Yearb Med Inform       Date:  2016-08-02

Review 7.  The great ESCAPE - a clinical pharmacologist's journey in stroke research.

Authors:  David J P Williams
Journal:  Br J Clin Pharmacol       Date:  2016-05-07       Impact factor: 4.335

8.  A surveillance tool to support quality assurance and research in personalized medicine.

Authors:  Naqi A Khan; Josh F Peterson
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

Review 9.  Mining electronic health records: towards better research applications and clinical care.

Authors:  Peter B Jensen; Lars J Jensen; Søren Brunak
Journal:  Nat Rev Genet       Date:  2012-05-02       Impact factor: 53.242

10.  Benefits of a clinical data warehouse with data mining tools to collect data for a radiotherapy trial.

Authors:  Erik Roelofs; Lucas Persoon; Sebastiaan Nijsten; Wolfgang Wiessler; André Dekker; Philippe Lambin
Journal:  Radiother Oncol       Date:  2013-02-05       Impact factor: 6.280

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