Literature DB >> 19737991

Translational informatics: enabling high-throughput research paradigms.

Philip R O Payne1, Peter J Embi, Chandan K Sen.   

Abstract

A common thread throughout the clinical and translational research domains is the need to collect, manage, integrate, analyze, and disseminate large-scale, heterogeneous biomedical data sets. However, well-established and broadly adopted theoretical and practical frameworks and models intended to address such needs are conspicuously absent in the published literature or other reputable knowledge sources. Instead, the development and execution of multidisciplinary, clinical, or translational studies are significantly limited by the propagation of "silos" of both data and expertise. Motivated by this fundamental challenge, we report upon the current state and evolution of biomedical informatics as it pertains to the conduct of high-throughput clinical and translational research and will present both a conceptual and practical framework for the design and execution of informatics-enabled studies. The objective of presenting such findings and constructs is to provide the clinical and translational research community with a common frame of reference for discussing and expanding upon such models and methodologies.

Mesh:

Year:  2009        PMID: 19737991      PMCID: PMC2789669          DOI: 10.1152/physiolgenomics.00050.2009

Source DB:  PubMed          Journal:  Physiol Genomics        ISSN: 1094-8341            Impact factor:   3.107


  61 in total

Review 1.  A primer on aspects of cognition for medical informatics.

Authors:  V L Patel; J F Arocha; D R Kaufman
Journal:  J Am Med Inform Assoc       Date:  2001 Jul-Aug       Impact factor: 4.497

2.  Translational and clinical science--time for a new vision.

Authors:  Elias A Zerhouni
Journal:  N Engl J Med       Date:  2005-10-12       Impact factor: 91.245

Review 3.  Workflow based framework for life science informatics.

Authors:  Abhishek Tiwari; Arvind K T Sekhar
Journal:  Comput Biol Chem       Date:  2007-08-19       Impact factor: 2.877

4.  Translational research in medical informatics or from theory to practice. A call for an applied informatics journal.

Authors:  C U Lehmann; M M Altuwaijri; Y C Li; M J Ball; R Haux
Journal:  Methods Inf Med       Date:  2008       Impact factor: 2.176

5.  Data standards in clinical research: gaps, overlaps, challenges and future directions.

Authors:  Rachel L Richesson; Jeffrey Krischer
Journal:  J Am Med Inform Assoc       Date:  2007-08-21       Impact factor: 4.497

6.  Keeping raw data in context.

Authors:  Ida Sim; Christopher G Chute; Harold Lehmann; Rakesh Nagarajan; Meredith Nahm; Richard H Scheuermann
Journal:  Science       Date:  2009-02-06       Impact factor: 47.728

7.  An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence.

Authors:  Satya S Sahoo; Olivier Bodenreider; Joni L Rutter; Karen J Skinner; Amit P Sheth
Journal:  J Biomed Inform       Date:  2008-02-29       Impact factor: 6.317

8.  Semantic mashup of biomedical data.

Authors:  Kei-Hoi Cheung; Vipul Kashyap; Joanne S Luciano; Huajun Chen; Yimin Wang; Susie Stephens
Journal:  J Biomed Inform       Date:  2008-08-12       Impact factor: 6.317

9.  caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability.

Authors:  George A Komatsoulis; Denise B Warzel; Francis W Hartel; Krishnakant Shanbhag; Ram Chilukuri; Gilberto Fragoso; Sherri de Coronado; Dianne M Reeves; Jillaine B Hadfield; Christophe Ludet; Peter A Covitz
Journal:  J Biomed Inform       Date:  2007-04-02       Impact factor: 6.317

10.  People and organizational issues in research systems implementation.

Authors:  Joan S Ash; Nicholas R Anderson; Peter Tarczy-Hornoch
Journal:  J Am Med Inform Assoc       Date:  2008-02-28       Impact factor: 4.497

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  21 in total

1.  Translational informatics: an industry perspective.

Authors:  Michael N Cantor
Journal:  J Am Med Inform Assoc       Date:  2012-01-11       Impact factor: 4.497

2.  Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project.

Authors:  Philip R O Payne; Rebecca D Jackson; Thomas M Best; Tara B Borlawsky; Albert M Lai; Stephen James; Metin N Gurcan
Journal:  J Am Med Inform Assoc       Date:  2012-05-30       Impact factor: 4.497

3.  Program in pharmacogenomics at the Ohio State University Medical Center.

Authors:  Joseph P Kitzmiller; Peter J Embi; Kandamurugu Manickam; Kevin M Sweet; Mitch A Phelps; Rebecca D Jackson; Clay B Marsh; Wolfgang Sadee
Journal:  Pharmacogenomics       Date:  2012-05       Impact factor: 2.533

4.  Evaluating the Coverage of the HL7 ® FHIR ® Standard to Support eSource Data Exchange Implementations for use in Multi-Site Clinical Research Studies.

Authors:  Maryam Y Garza; Michael Rutherford; Sahiti Myneni; Susan Fenton; Anita Walden; Umit Topaloglu; Eric Eisenstein; Karan R Kumar; Kanecia O Zimmerman; Mitra Rocca; Gideon Scott Gordon; Sam Hume; Zhan Wang; Meredith Zozus
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

5.  Geographic health information systems: a platform to support the 'triple aim'.

Authors:  Marie Lynn Miranda; Jeffrey Ferranti; Benjamin Strauss; Brian Neelon; Robert M Califf
Journal:  Health Aff (Millwood)       Date:  2013-09       Impact factor: 6.301

6.  Research-IQ: development and evaluation of an ontology-anchored integrative query tool.

Authors:  Tara B Borlawsky; Omkar Lele; Philip R O Payne
Journal:  J Biomed Inform       Date:  2011-07-29       Impact factor: 6.317

Review 7.  Biomedical informatics and translational medicine.

Authors:  Indra Neil Sarkar
Journal:  J Transl Med       Date:  2010-02-26       Impact factor: 5.531

8.  Multi-dimensional discovery of biomarker and phenotype complexes.

Authors:  Philip R O Payne; Kun Huang; Kristin Keen-Circle; Abhisek Kundu; Jie Zhang; Tara B Borlawsky
Journal:  BMC Bioinformatics       Date:  2010-10-28       Impact factor: 3.169

Review 9.  Research Infrastructure for Collaborative Team Science: Challenges in Technology-Supported Workflows in and Across Laboratories, Institutions, and Geographies.

Authors:  Barbara Mirel; Airong Luo; Marcelline Harris
Journal:  Semin Nephrol       Date:  2015-05       Impact factor: 5.299

10.  DISCOVERY OF MOLECULARLY TARGETED THERAPIES.

Authors:  Kelly Regan; Zachary Abrams; Michael Sharpnack; Arunima Srivastava; Kun Huang; Nigam Shah; Philip R O Payne
Journal:  Pac Symp Biocomput       Date:  2016
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