Literature DB >> 20162649

3-Mercapto-2,6-pyridinedicarboxylic acid: a small lanthanide-binding tag for protein studies by NMR spectroscopy.

Bradley Man1, Xun-Cheng Su, Haobo Liang, Shane Simonsen, Thomas Huber, Barbara A Messerle, Gottfried Otting.   

Abstract

Paramagnetic effects from lanthanide ions present powerful tools for protein studies by nuclear magnetic resonance (NMR) spectroscopy provided that the lanthanide can be site-specifically and rigidly attached to the protein. A new, particularly small and rigid lanthanide-binding tag, 3-mercapto-2,6-pyridinedicarboxylic acid (3MDPA), was synthesized and attached to two different proteins via a disulfide bond. The complexes of the N-terminal domain of the E. coli arginine repressor (ArgN) with seven different paramagnetic lanthanide ions and Co(2+) were analyzed in detail by NMR spectroscopy. The magnetic susceptibility anisotropy (Delta chi) tensors and metal position were determined from pseudocontact shifts. The 3MDPA tag generated very different Delta chi tensor orientations compared to the previously studied 4-mercaptomethyl-DPA tag, making it a highly complementary and useful tool for protein NMR studies.

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Year:  2010        PMID: 20162649     DOI: 10.1002/chem.200902904

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  11 in total

1.  Information content of long-range NMR data for the characterization of conformational heterogeneity.

Authors:  Witold Andrałojć; Konstantin Berlin; David Fushman; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Luca Sgheri
Journal:  J Biomol NMR       Date:  2015-06-05       Impact factor: 2.835

2.  FANTEN: a new web-based interface for the analysis of magnetic anisotropy-induced NMR data.

Authors:  Mauro Rinaldelli; Azzurra Carlon; Enrico Ravera; Giacomo Parigi; Claudio Luchinat
Journal:  J Biomol NMR       Date:  2014-11-22       Impact factor: 2.835

3.  Tunable paramagnetic relaxation enhancements by [Gd(DPA)(3)] (3-) for protein structure analysis.

Authors:  Hiromasa Yagi; Karin V Loscha; Xun-Cheng Su; Mitchell Stanton-Cook; Thomas Huber; Gottfried Otting
Journal:  J Biomol NMR       Date:  2010-04-20       Impact factor: 2.835

Review 4.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

5.  Site-specific tagging proteins with a rigid, small and stable transition metal chelator, 8-hydroxyquinoline, for paramagnetic NMR analysis.

Authors:  Yin Yang; Feng Huang; Thomas Huber; Xun-Cheng Su
Journal:  J Biomol NMR       Date:  2016-01-06       Impact factor: 2.835

6.  A systematic study of labelling an α-helix in a protein with a lanthanide using IDA-SH or NTA-SH tags.

Authors:  Hiromasa Yagi; Ansis Maleckis; Gottfried Otting
Journal:  J Biomol NMR       Date:  2012-12-22       Impact factor: 2.835

7.  Cys-Ph-TAHA: a lanthanide binding tag for RDC and PCS enhanced protein NMR.

Authors:  Fabian Peters; Mitcheell Maestre-Martinez; Andrei Leonov; Lidija Kovačič; Stefan Becker; Rolf Boelens; Christian Griesinger
Journal:  J Biomol NMR       Date:  2011-09-04       Impact factor: 2.835

8.  Integral membrane protein structure determination using pseudocontact shifts.

Authors:  Duncan J Crick; Jue X Wang; Bim Graham; James D Swarbrick; Helen R Mott; Daniel Nietlispach
Journal:  J Biomol NMR       Date:  2015-01-22       Impact factor: 2.835

9.  Compact, hydrophilic, lanthanide-binding tags for paramagnetic NMR spectroscopy.

Authors:  M D Lee; C-T Loh; J Shin; S Chhabra; M L Dennis; G Otting; J D Swarbrick; B Graham
Journal:  Chem Sci       Date:  2015-02-25       Impact factor: 9.825

10.  Paramagnetic Ligand Tagging To Identify Protein Binding Sites.

Authors:  Ulrika Brath; Shashikala I Swamy; Alberte X Veiga; Ching-Chieh Tung; Filip Van Petegem; Máté Erdélyi
Journal:  J Am Chem Soc       Date:  2015-08-27       Impact factor: 15.419

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