Literature DB >> 20161694

'Hot' macromolecular crystals.

Katarzyna D Koclega1, Maksymilian Chruszcz, Matthew D Zimmerman, Grzegorz Bujacz, Wladek Minor.   

Abstract

Transcriptional regulator protein TM1030 from the hyperthermophile Thermotoga maritima, as well as its complex with DNA, was crystallized at a wide range of temperatures. Crystallization plates were incubated at 4, 20, 37 and 50° C over 3 weeks. The best crystals of TM1030 in complex with DNA were obtained at 4, 20 and 37° C, while TM1030 alone crystallized almost equally well in all temperatures. The crystals grown at different temperatures were used for X-ray diffraction experiments and their structures were compared. Surprisingly, the models of TM1030 obtained from crystals grown at different temperatures are similar in quality. While there are some examples of structures of proteins grown at elevated temperatures in the PDB, these temperatures appear to be underrepresented. Our studies show that crystals of some proteins may be grown and are stable at broad range of temperatures. We suggest that crystallization experiments at elevated temperatures could be used as a standard part of the crystallization protocol.

Entities:  

Year:  2009        PMID: 20161694      PMCID: PMC2809425          DOI: 10.1021/cg900971h

Source DB:  PubMed          Journal:  Cryst Growth Des        ISSN: 1528-7483            Impact factor:   4.076


  22 in total

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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3.  PGTdb: a database providing growth temperatures of prokaryotes.

Authors:  Shir-Ly Huang; Li-Cheng Wu; Han-Kuen Liang; Kuan-Ting Pan; Jorng-Tzong Horng; Ming-Tat Ko
Journal:  Bioinformatics       Date:  2004-01-22       Impact factor: 6.937

4.  Development and characterization of temperature-controlled microreactors for protein crystallization.

Authors:  Michael Berg; Matthias Urban; Ulrich Dillner; Peter Mühlig; Günter Mayer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26

5.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

6.  The Structural Biology Center 19ID undulator beamline: facility specifications and protein crystallographic results.

Authors:  Gerd Rosenbaum; Randy W Alkire; Gwyndaf Evans; Frank J Rotella; Krzystof Lazarski; Rong Guang Zhang; Stephan L Ginell; Norma Duke; Istvan Naday; Jack Lazarz; Michael J Molitsky; Lisa Keefe; John Gonczy; Larry Rock; Ruslan Sanishvili; Martin A Walsh; Edwin Westbrook; Andrzej Joachimiak
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7.  Data mining of metal ion environments present in protein structures.

Authors:  Heping Zheng; Maksymilian Chruszcz; Piotr Lasota; Lukasz Lebioda; Wladek Minor
Journal:  J Inorg Biochem       Date:  2008-05-28       Impact factor: 4.155

8.  Macromolecular Crystallographic Information File.

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Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

9.  Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank.

Authors:  Huanwang Yang; Vladimir Guranovic; Shuchismita Dutta; Zukang Feng; Helen M Berman; John D Westbrook
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-09-23

10.  Structural analysis of the domain interface in DrrB, a response regulator of the OmpR/PhoB subfamily.

Authors:  Victoria L Robinson; Ti Wu; Ann M Stock
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

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  3 in total

Review 1.  Unmet challenges of structural genomics.

Authors:  Maksymilian Chruszcz; Marcin Domagalski; Tomasz Osinski; Alexander Wlodawer; Wladek Minor
Journal:  Curr Opin Struct Biol       Date:  2010-08-31       Impact factor: 6.809

2.  To automate or not to automate: this is the question.

Authors:  M Cymborowski; M Klimecka; M Chruszcz; M D Zimmerman; I A Shumilin; D Borek; K Lazarski; A Joachimiak; Z Otwinowski; W Anderson; W Minor
Journal:  J Struct Funct Genomics       Date:  2010-06-06

3.  Data management in the modern structural biology and biomedical research environment.

Authors:  Matthew D Zimmerman; Marek Grabowski; Marcin J Domagalski; Elizabeth M Maclean; Maksymilian Chruszcz; Wladek Minor
Journal:  Methods Mol Biol       Date:  2014
  3 in total

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