Literature DB >> 20161419

A New Paradigm for Protein Design and Biological Self-Assembly.

Gizem Akçay1, Krishna Kumar.   

Abstract

Very few molecules with biological origins contain the element fluorine. Nature's inability to incorporate fluorine into biomolecules is related to the low concentration of free fluoride in sea and surface water. However, judicious introduction of fluorine into proteins, nucleic acids, lipids and carbohydrates has allowed mechanistic scrutiny of enzyme catalysis, control of protein oligomerization in membranes, clustered display of ligands on surfaces of living cells, and in increasing the protease stability of protein and peptide therapeutics.

Entities:  

Year:  2009        PMID: 20161419      PMCID: PMC2786179          DOI: 10.1016/j.jfluchem.2009.09.002

Source DB:  PubMed          Journal:  J Fluor Chem        ISSN: 0022-1139            Impact factor:   2.050


  41 in total

Review 1.  Fluorinated amino acids in protein design and engineering.

Authors:  Nicholas C Yoder; Krishna Kumar
Journal:  Chem Soc Rev       Date:  2002-11       Impact factor: 54.564

Review 2.  Organic fluorine: odd man out.

Authors:  Jack D Dunitz
Journal:  Chembiochem       Date:  2004-05-03       Impact factor: 3.164

Review 3.  19F: a versatile reporter for non-invasive physiology and pharmacology using magnetic resonance.

Authors:  Jian-xin Yu; Vikram D Kodibagkar; Weina Cui; Ralph P Mason
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

4.  Stabilization of bzip peptides through incorporation of fluorinated aliphatic residues.

Authors:  Soojin Son; I Caglar Tanrikulu; David A Tirrell
Journal:  Chembiochem       Date:  2006-08       Impact factor: 3.164

5.  Fluorinated interfaces drive self-association of transmembrane alpha helices in lipid bilayers.

Authors:  Natascha Naarmann; Başar Bilgiçer; He Meng; Krishna Kumar; Claudia Steinem
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-10       Impact factor: 15.336

6.  Properties and identification of human protein drug targets.

Authors:  Tala M Bakheet; Andrew J Doig
Journal:  Bioinformatics       Date:  2009-01-21       Impact factor: 6.937

7.  Stabilization of coiled-coil peptide domains by introduction of trifluoroleucine.

Authors:  Y Tang; G Ghirlanda; N Vaidehi; J Kua; D T Mainz; W A Goddard III; W F DeGrado; D A Tirrell
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

8.  Fluorous affinity purification of oligonucleotides.

Authors:  William H Pearson; David A Berry; Patrick Stoy; Kee-Yong Jung; Anthony D Sercel
Journal:  J Org Chem       Date:  2005-09-02       Impact factor: 4.354

9.  Stabilizing and destabilizing effects of phenylalanine --> F5-phenylalanine mutations on the folding of a small protein.

Authors:  Matthew G Woll; Erik B Hadley; Sandro Mecozzi; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2006-12-20       Impact factor: 15.419

10.  Biosynthesis and stability of coiled-coil peptides containing (2S,4R)-5,5,5-trifluoroleucine and (2S,4S)-5,5,5-trifluoroleucine.

Authors:  Jin Kim Montclare; Soojin Son; Ginevra A Clark; Krishna Kumar; David A Tirrell
Journal:  Chembiochem       Date:  2009-01-05       Impact factor: 3.164

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  8 in total

1.  Optimizing ¹⁹F NMR protein spectroscopy by fractional biosynthetic labeling.

Authors:  Julianne L Kitevski-LeBlanc; Ferenc Evanics; R Scott Prosser
Journal:  J Biomol NMR       Date:  2010-08-24       Impact factor: 2.835

2.  Transferred NOESY NMR studies of biotin mimetic peptide (FSHPQNT) bound to streptavidin: a structural model for studies of peptide-protein interactions.

Authors:  Dawit Gizachew; Edward Dratz
Journal:  Chem Biol Drug Des       Date:  2011-05-26       Impact factor: 2.817

3.  Synthesis of α-CF3-proline derivatives by means of a formal (3 + 2)-cyclisation between trifluoropyruvate imines and Michael acceptors.

Authors:  Michael Winter; Kirill Faust; Markus Himmelsbach; Mario Waser
Journal:  Org Biomol Chem       Date:  2019-06-12       Impact factor: 3.876

4.  Position-dependent impact of hexafluoroleucine and trifluoroisoleucine on protease digestion.

Authors:  Susanne Huhmann; Anne-Katrin Stegemann; Kristin Folmert; Damian Klemczak; Johann Moschner; Michelle Kube; Beate Koksch
Journal:  Beilstein J Org Chem       Date:  2017-12-22       Impact factor: 2.883

Review 5.  Alpha-helical peptide assemblies giving new function to designed structures.

Authors:  Elizabeth H C Bromley; Kevin J Channon
Journal:  Prog Mol Biol Transl Sci       Date:  2011       Impact factor: 3.622

6.  Synthesis, structural studies and biological properties of some phosphono-perfluorophenylalanine derivatives formed by SNAr reactions.

Authors:  Joanna Kwiczak-Yiğitbaşı; Jean-Luc Pirat; David Virieux; Jean-Noël Volle; Agnieszka Janiak; Marcin Hoffmann; Jakub Mrzygłód; Dariusz Wawrzyniak; Jan Barciszewski; Donata Pluskota-Karwatka
Journal:  RSC Adv       Date:  2019-08-05       Impact factor: 4.036

7.  Pd-Catalyzed Allylation of Imines to Access α-CF3-Substituted α-Amino Acid Derivatives.

Authors:  Michael Winter; Hyunwoo Kim; Mario Waser
Journal:  European J Org Chem       Date:  2019-10-09

8.  Systematic Evaluation of Fluorination as Modification for Peptide-Based Fusion Inhibitors against HIV-1 Infection.

Authors:  Susanne Huhmann; Elisabeth K Nyakatura; Anette Rohrhofer; Johann Moschner; Barbara Schmidt; Jutta Eichler; Christian Roth; Beate Koksch
Journal:  Chembiochem       Date:  2021-10-22       Impact factor: 3.461

  8 in total

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