Literature DB >> 20154669

Aminoglycoside activity observed on single pre-translocation ribosome complexes.

Michael B Feldman, Daniel S Terry, Roger B Altman, Scott C Blanchard.   

Abstract

Entities:  

Year:  2010        PMID： 20154669      PMCID： PMC3566567          DOI： 10.1038/nchembio0310-244c

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN： 1552-4450            Impact factor:   15.040


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  50 in total

1.  Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome.

Authors:  Y P Semenkov; M V Rodnina; W Wintermeyer
Journal:  Nat Struct Biol       Date:  2000-11

2.  Peptidyl-tRNA regulates the GTPase activity of translation factors.

Authors:  Andrey V Zavialov; Måns Ehrenberg
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

Review 3.  Halting a cellular production line: responses to ribosomal pausing during translation.

Authors:  J Ross Buchan; Ian Stansfield
Journal:  Biol Cell       Date:  2007-09       Impact factor: 4.458

Review 4.  Translation at the single-molecule level.

Authors:  R Andrew Marshall; Colin Echeverría Aitken; Magdalena Dorywalska; Joseph D Puglisi
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 5.  The allosteric three-site model for the ribosomal elongation cycle: features and future.

Authors:  K H Nierhaus
Journal:  Biochemistry       Date:  1990-05-29       Impact factor: 3.162

6.  The translocation inhibitor tuberactinomycin binds to nucleic acids and blocks the in vitro assembly of 50S subunits.

Authors:  T Yamada; T Teshima; T Shiba; K H Nierhaus
Journal:  Nucleic Acids Res       Date:  1980-12-11       Impact factor: 16.971

Review 7.  A new view of protein synthesis: mapping the free energy landscape of the ribosome using single-molecule FRET.

Authors:  James B Munro; Andrea Vaiana; Kevin Y Sanbonmatsu; Scott C Blanchard
Journal:  Biopolymers       Date:  2008-07       Impact factor: 2.505

8.  Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.

Authors:  Maria A Borovinskaya; Raj D Pai; Wen Zhang; Barbara S Schuwirth; James M Holton; Go Hirokawa; Hideko Kaji; Akira Kaji; Jamie H Doudna Cate
Journal:  Nat Struct Mol Biol       Date:  2007-07-29       Impact factor: 15.369

9.  The antibiotic viomycin traps the ribosome in an intermediate state of translocation.

Authors:  Dmitri N Ermolenko; P Clint Spiegel; Zigurts K Majumdar; Robyn P Hickerson; Robert M Clegg; Harry F Noller
Journal:  Nat Struct Mol Biol       Date:  2007-05-21       Impact factor: 15.369

10.  Dissociation rates of peptidyl-tRNA from the P-site of E.coli ribosomes.

Authors:  R Karimi; M Ehrenberg
Journal:  EMBO J       Date:  1996-03-01       Impact factor: 11.598
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  8 in total

1.  Structure and dynamics of the mammalian ribosomal pretranslocation complex.

Authors:  Tatyana Budkevich; Jan Giesebrecht; Roger B Altman; James B Munro; Thorsten Mielke; Knud H Nierhaus; Scott C Blanchard; Christian M T Spahn
Journal:  Mol Cell       Date:  2011-10-21       Impact factor: 17.970

2.  Structure-activity relationships among the kanamycin aminoglycosides: role of ring I hydroxyl and amino groups.

Authors:  Sumantha Salian; Tanja Matt; Rashid Akbergenov; Shinde Harish; Martin Meyer; Stefan Duscha; Dmitri Shcherbakov; Bruno B Bernet; Andrea Vasella; Eric Westhof; Erik C Böttger
Journal:  Antimicrob Agents Chemother       Date:  2012-09-04       Impact factor: 5.191

3.  High-resolution structure of the Escherichia coli ribosome.

Authors:  Jonas Noeske; Michael R Wasserman; Daniel S Terry; Roger B Altman; Scott C Blanchard; Jamie H D Cate
Journal:  Nat Struct Mol Biol       Date:  2015-03-16       Impact factor: 15.369

4.  Identification and evaluation of improved 4'-O-(alkyl) 4,5-disubstituted 2-deoxystreptamines as next-generation aminoglycoside antibiotics.

Authors:  Stefan Duscha; Heithem Boukari; Dimitri Shcherbakov; Sumantha Salian; Sandrina Silva; Ann Kendall; Takayuki Kato; Rashid Akbergenov; Deborah Perez-Fernandez; Bruno Bernet; Swapna Vaddi; Pia Thommes; Jochen Schacht; David Crich; Andrea Vasella; Erik C Böttger
Journal:  MBio       Date:  2014-09-30       Impact factor: 7.867

Review 5.  Tuberactinomycin antibiotics: Biosynthesis, anti-mycobacterial action, and mechanisms of resistance.

Authors:  Zane T Laughlin; Graeme L Conn
Journal:  Front Microbiol       Date:  2022-08-11       Impact factor: 6.064

6.  4'-O-substitutions determine selectivity of aminoglycoside antibiotics.

Authors:  Déborah Perez-Fernandez; Dmitri Shcherbakov; Tanja Matt; Ng Chyan Leong; Iwona Kudyba; Stefan Duscha; Heithem Boukari; Rashmi Patak; Srinivas Reddy Dubbaka; Kathrin Lang; Martin Meyer; Rashid Akbergenov; Pietro Freihofer; Swapna Vaddi; Pia Thommes; V Ramakrishnan; Andrea Vasella; Erik C Böttger
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

7.  Aminoglycoside interactions and impacts on the eukaryotic ribosome.

Authors:  Irina Prokhorova; Roger B Altman; Muminjon Djumagulov; Jaya P Shrestha; Alexandre Urzhumtsev; Angelica Ferguson; Cheng-Wei Tom Chang; Marat Yusupov; Scott C Blanchard; Gulnara Yusupova
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-05       Impact factor: 11.205

8.  Optimization of a fluorescent-mRNA based real-time assay for precise kinetic measurements of ribosomal translocation.

Authors:  Changil Kim; Mikael Holm; Chandra Sekhar Mandava; Suparna Sanyal
Journal:  RNA Biol       Date:  2021-05-03       Impact factor: 4.652
  8 in total

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