Literature DB >> 18518820

Translation at the single-molecule level.

R Andrew Marshall1, Colin Echeverría Aitken, Magdalena Dorywalska, Joseph D Puglisi.   

Abstract

Decades of studies have established translation as a multistep, multicomponent process that requires intricate communication to achieve high levels of speed, accuracy, and regulation. A crucial next step in understanding translation is to reveal the functional significance of the large-scale motions implied by static ribosome structures. This requires determining the trajectories, timescales, forces, and biochemical signals that underlie these dynamic conformational changes. Single-molecule methods have emerged as important tools for the characterization of motion in complex systems, including translation. In this review, we chronicle the key discoveries in this nascent field, which have demonstrated the power and promise of single-molecule techniques in the study of translation.

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Year:  2008        PMID: 18518820     DOI: 10.1146/annurev.biochem.77.070606.101431

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  52 in total

1.  Excited states of ribosome translocation revealed through integrative molecular modeling.

Authors:  Paul C Whitford; Aqeel Ahmed; Yanan Yu; Scott P Hennelly; Florence Tama; Christian M T Spahn; José N Onuchic; Karissa Y Sanbonmatsu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-11       Impact factor: 11.205

2.  Connecting energy landscapes with experimental rates for aminoacyl-tRNA accommodation in the ribosome.

Authors:  Paul C Whitford; José N Onuchic; Karissa Y Sanbonmatsu
Journal:  J Am Chem Soc       Date:  2010-09-29       Impact factor: 15.419

3.  Optimization of speed and accuracy of decoding in translation.

Authors:  Ingo Wohlgemuth; Corinna Pohl; Marina V Rodnina
Journal:  EMBO J       Date:  2010-09-14       Impact factor: 11.598

4.  Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.

Authors:  Peter Geggier; Richa Dave; Michael B Feldman; Daniel S Terry; Roger B Altman; James B Munro; Scott C Blanchard
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

5.  Single-molecule analysis: A ribosome in action.

Authors:  Susanne Brakmann
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

6.  Complex molecular dynamics in the spotlight.

Authors:  Lois Pollack; Watt W Webb
Journal:  Nat Biotechnol       Date:  2010-06       Impact factor: 54.908

7.  GTPase activation of elongation factor EF-Tu by the ribosome during decoding.

Authors:  Jan-Christian Schuette; Frank V Murphy; Ann C Kelley; John R Weir; Jan Giesebrecht; Sean R Connell; Justus Loerke; Thorsten Mielke; Wei Zhang; Pawel A Penczek; V Ramakrishnan; Christian M T Spahn
Journal:  EMBO J       Date:  2009-02-19       Impact factor: 11.598

8.  Microfluidic mixer designed for performing single-molecule kinetics with confocal detection on timescales from milliseconds to minutes.

Authors:  Bengt Wunderlich; Daniel Nettels; Stephan Benke; Jennifer Clark; Sascha Weidner; Hagen Hofmann; Shawn H Pfeil; Benjamin Schuler
Journal:  Nat Protoc       Date:  2013-07-11       Impact factor: 13.491

Review 9.  Fidelity at the molecular level: lessons from protein synthesis.

Authors:  Hani S Zaher; Rachel Green
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

10.  Quantifying the dynamics of IRES and cap translation with single-molecule resolution in live cells.

Authors:  Amanda Koch; Luis Aguilera; Tatsuya Morisaki; Brian Munsky; Timothy J Stasevich
Journal:  Nat Struct Mol Biol       Date:  2020-09-21       Impact factor: 15.369

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